RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 APBB1IPQ7Z5R6 666 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 FILIP1Q7Z7B0 1213 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 TTC6Q86TZ1 520 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 PMM1Q92871 262 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 GABBR1Q9UBS5 961 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 KCNH3Q9ULD8 1083 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 GFRA2O00451 464 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 NFIBO00712 420 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 STK10O94804 968 aaKnown RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 CDK8P49336 464 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 CHMP4BP1P59074 171 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 NFE2L2Q16236 605 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 SYDE1Q6ZW31 735 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 ANKLE2Q86XL3 938 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 TEX2Q8IWB9 1127 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 FBXO15Q8NCQ5 510 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 RIN3Q8TB24 985 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 ABHD4Q8TB40 342 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 STAG1Q8WVM7 1258 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 JARID2Q92833 1246 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 TJP2Q9UDY2 1190 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 YARSP54577 528 aaKnown RBP5.53□□□□□ -1.52
HMGB1-204ENST00000399489 TNK2Q07912 1038 aa5.53□□□□□ -1.52
HMGB1-204ENST00000399489 TAF1CQ15572 869 aaPredicted RBP5.53□□□□□ -1.52
HMGB1-204ENST00000399489 ZNF394Q53GI3 561 aa5.53□□□□□ -1.52
HMGB1-204ENST00000399489 FYB2Q5VWT5 728 aa5.53□□□□□ -1.52
HMGB1-204ENST00000399489 NOC4LQ9BVI4 516 aaKnown RBP5.53□□□□□ -1.52
HMGB1-204ENST00000399489 GPATCH2Q9NW75 528 aa5.53□□□□□ -1.52
HMGB1-204ENST00000399489 DDX41Q9UJV9 622 aaKnown RBP5.53□□□□□ -1.52
HMGB1-204ENST00000399489 CREB3O43889 395 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 TSPAN15O95858 294 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 S100BP04271 92 aaPredicted RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 RACK1P63244 317 aaKnown RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 RALBP1Q15311 655 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 HSP90AB4PQ58FF6 505 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 PRR23BQ6ZRT6 265 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 CCDC84Q86UT8 332 aaPredicted RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 CREG2Q8IUH2 290 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 MCATQ8IVS2 390 aaKnown RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 DPH2Q9BQC3 489 aaPredicted RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 NSUN3Q9H649 340 aaKnown RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 DDX56Q9NY93 547 aaKnown RBP5.52□□□□□ -1.53
HMGB1-204ENST00000399489 CEP131Q9UPN4 1083 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 PCDHGB7Q9Y5F8 929 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 CNTNAP4Q9C0A0 1308 aa5.52□□□□□ -1.53
HMGB1-204ENST00000399489 DNAJC6O75061 913 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 CENPBP07199 599 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 TMEM253P0C7T8 217 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 ST13P50502 369 aaKnown RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 TBX4P57082 545 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 CCDC146Q8IYE0 955 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 FAM13CQ8NE31 585 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 MRFAP1L1Q96HT8 127 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 EPB41L4BQ9H329 900 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 TMEM59LQ9UK28 342 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 G3BP2Q9UN86 482 aaKnown RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 PLCG1P19174 1290 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 TFE3P19532 575 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 TPP2P29144 1249 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 SERINC3Q13530 473 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 SPTY2D1Q68D10 685 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 MYLIPQ8WY64 445 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 EVI5LQ96CN4 794 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 CRELD1Q96HD1 420 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 DIRC2Q96SL1 478 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 UBA5Q9GZZ9 404 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 SPC25Q9HBM1 224 aa5.51□□□□□ -1.53
HMGB1-204ENST00000399489 DCP1AQ9NPI6 582 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-204ENST00000399489 PPFIA4O75335 1185 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 HK2P52789 917 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 PWP1Q13610 501 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 RELL1Q8IUW5 271 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 ZNF654Q8IZM8 581 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 OXR1Q8N573 874 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 CYB5D2Q8WUJ1 264 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.5□□□□□ -1.536e-8■□□□□ 10.3
HMGB1-204ENST00000399489 C19orf73Q9NVV2 129 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 DUSP13Q9UII6 198 aa5.5□□□□□ -1.53
HMGB1-204ENST00000399489 LTKP29376 864 aa5.49□□□□□ -1.53
HMGB1-204ENST00000399489 GJA8P48165 433 aa5.49□□□□□ -1.53
HMGB1-204ENST00000399489 MLECQ14165 292 aa5.49□□□□□ -1.53
HMGB1-204ENST00000399489 MEI1Q5TIA1 1274 aa5.49□□□□□ -1.53
HMGB1-204ENST00000399489 ACSF2Q96CM8 615 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-204ENST00000399489 SGSM3Q96HU1 749 aa5.49□□□□□ -1.53
HMGB1-204ENST00000399489 TCAF2A6NFQ2 919 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 MAFGO15525 162 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 ESR1P03372 595 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 LMNB2Q03252 620 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 PLEKHG4Q58EX7 1191 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 NBPF6Q5VWK0 638 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 USP48Q86UV5 1035 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 CCAR1Q8IX12 1150 aaKnown RBP5.48□□□□□ -1.53
HMGB1-204ENST00000399489 DNAJB8Q8NHS0 232 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 RNPC3Q96LT9 517 aaKnown RBP5.48□□□□□ -1.53
HMGB1-204ENST00000399489 NBPF4Q96M43 638 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 SLC26A8Q96RN1 970 aa5.48□□□□□ -1.53
HMGB1-204ENST00000399489 GPR62Q9BZJ7 368 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms