RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PAK1Q13153 545 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 NELFBQ8WX92 580 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 PDE11AQ9HCR9 933 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 ABCB6Q9NP58 842 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 L1RE1Q9UN81 338 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 DUOX1Q9NRD9 1551 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 KCNJ18B7U540 433 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 GTPBP6O43824 516 aaPredicted RBP14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CAMTA2O94983 1202 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 NTSR2O95665 410 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 RHOXF2BP0C7M4 288 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CALM1P0DP23 149 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CALM2P0DP24 149 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CALM3P0DP25 149 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 TUBB2AQ13885 445 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 KCNJ12Q14500 433 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CYP26C1Q6V0L0 522 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 CHP1Q99653 195 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 NAPGQ99747 312 aaPredicted RBP14.35□□□□□ -0.11
SHMT1-205ENST00000395684 SLF1Q9BQI6 1058 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 RHOXF2Q9BQY4 288 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 TUBB2BQ9BVA1 445 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 BRIP1Q9BX63 1249 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 GDAQ9Y2T3 454 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 USP17L12C9JPN9 530 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 USP17L21D6R901 530 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 TULP2O00295 520 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 KRT9P35527 623 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 WWC2Q6AWC2 1192 aa14.35□□□□□ -0.11
SHMT1-205ENST00000395684 DDAH1O94760 285 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 NLRP5P59047 1200 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 VSNL1P62760 191 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 GPS2Q13227 327 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 ZNF658Q5TYW1 1059 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 IRF2BP1Q8IU81 584 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 TRERF1Q96PN7 1200 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 CICQ96RK0 1608 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 NIP7Q9Y221 180 aaKnown RBP eCLIP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 BAZ2BQ9UIF8 2168 aaKnown RBP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 POTEB2H3BUK9 544 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 SCG2P13521 617 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 PRCPP42785 496 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 PARP10Q53GL7 1025 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 FAM47AQ5JRC9 791 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 HDXQ7Z353 690 aa14.34□□□□□ -0.11
SHMT1-205ENST00000395684 NOA1Q8NC60 698 aaKnown RBP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 REXO2Q9Y3B8 237 aaKnown RBP14.34□□□□□ -0.11
SHMT1-205ENST00000395684 EXOC5O00471 708 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 RPN1P04843 607 aaKnown RBP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CAPN2P17655 700 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CRKLP46109 303 aaKnown RBP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 AMPD2Q01433 879 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 SPAG1Q07617 926 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 C4orf32Q8N8J7 132 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CTCFLQ8NI51 663 aaPredicted RBP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 EXOC4Q96A65 974 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CCDC87Q9NVE4 849 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 TRIM10Q9UDY6 481 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CTAGE15A4D2H0 777 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 N4BP1O75113 896 aaKnown RBP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CTAGE8P0CG41 777 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 TRAPPC10P48553 1259 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 UBXN1Q04323 297 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 WHAMMP3Q1A5X7 153 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CTAGE6Q86UF2 777 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CTAGE4Q8IX94 777 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 MYO1AQ9UBC5 1043 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 BAZ2AQ9UIF9 1905 aaKnown RBP14.33□□□□□ -0.12
SHMT1-205ENST00000395684 CACNA1SQ13698 1873 aa14.33□□□□□ -0.12
SHMT1-205ENST00000395684 MYH8P13535 1937 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 TRIM49BA6NDI0 452 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 PFKFB3Q16875 520 aaPredicted RBP14.32□□□□□ -0.12
SHMT1-205ENST00000395684 MUM1L1Q5H9M0 696 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 NCAPH2Q6IBW4 605 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 GNL3LQ9NVN8 582 aaKnown RBP14.32□□□□□ -0.12
SHMT1-205ENST00000395684 TMEM51Q9NW97 253 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 EPN1Q9Y6I3 576 aaPredicted RBP14.32□□□□□ -0.12
SHMT1-205ENST00000395684 TTC26A0AVF1 554 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 PMS1P54277 932 aaKnown RBP14.32□□□□□ -0.12
SHMT1-205ENST00000395684 TUBB4BP68371 445 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 PIP4K2BP78356 416 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 RAD51AP2Q09MP3 1159 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 TRIM14Q14142 442 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 ZSCAN26Q16670 478 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 C3orf67Q6ZVT6 689 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 PSD3Q9NYI0 1048 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 MYO6Q9UM54 1294 aa14.32□□□□□ -0.12
SHMT1-205ENST00000395684 ERLIN1O75477 346 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 NDUFA10O95299 355 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 PARP1P09874 1014 aaKnown RBP14.31□□□□□ -0.12
SHMT1-205ENST00000395684 PCP11498 1178 aaKnown RBP14.31□□□□□ -0.12
SHMT1-205ENST00000395684 ATP6V1AP38606 617 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 LMAN1P49257 510 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 ANKRD20A12PQ8NF67 263 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 FAM84BQ96KN1 310 aaPredicted RBP14.31□□□□□ -0.12
SHMT1-205ENST00000395684 PYM1Q9BRP8 204 aaKnown RBP14.31□□□□□ -0.12
SHMT1-205ENST00000395684 VPS18Q9P253 973 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 GUCA1BQ9UMX6 200 aa14.31□□□□□ -0.12
SHMT1-205ENST00000395684 FAM205AQ6ZU69 1335 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms