RNA–Protein interactions for RNA: ENST00000355233.9

PTPRD-201, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,251 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-201ENST00000355233 SLC20A2Q08357 652 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 RRAGBQ5VZM2 374 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ADALQ6DHV7 355 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 MIER3Q7Z3K6 550 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 VPS52Q8N1B4 723 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 EPC1Q9H2F5 836 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 OVOS2A0A0G2JMS6 1433 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ARHGEF37A1IGU5 675 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 CCDC188H7C350 402 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 RNMTO43148 476 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ARHGAP4P98171 946 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 GRM1Q13255 1194 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ZSCAN26Q16670 478 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 TTC25Q96NG3 672 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 IFT172Q9UG01 1749 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 MAD1L1Q9Y6D9 718 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SYNRGQ9UMZ2 1314 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 GNPATO15228 680 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 APBA3O96018 575 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SLC8A3P57103 927 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 NOP14P78316 857 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PSMD2Q13200 908 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 CC2D2BQ6DHV5 1058 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 NUP133Q8WUM0 1156 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 BICD1Q96G01 975 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 KAT14Q9H8E8 782 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 GPR108Q9NPR9 543 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PCK1P35558 622 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 TBCCQ15814 346 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PRPF40BQ6NWY9 871 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SYDE1Q6ZW31 735 aaPredicted RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 MCUR1Q96AQ8 359 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 DDX27Q96GQ7 796 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 GOPCQ9HD26 462 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ZNF277Q9NRM2 450 aaPredicted RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ZBTB40Q9NUA8 1239 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ODF2LQ9ULJ1 636 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 LMTK2Q8IWU2 1503 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ARHGAP10A1A4S6 786 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SMARCA5O60264 1052 aaPredicted RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PPP6R2O75170 966 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 CLNS1AP54105 237 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 BIRC2Q13490 618 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 DTHD1Q6ZMT9 781 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 ATRIPQ8WXE1 791 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 C4BPBP20851 252 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SMTNP53814 917 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PCGF5Q86SE9 256 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 USP48Q86UV5 1035 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 PRPF31Q8WWY3 499 aaKnown RBP5.42□□□□□ -1.54
PTPRD-201ENST00000355233 STAMBPL1Q96FJ0 436 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 HYOU1Q9Y4L1 999 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 SAR1BQ9Y6B6 198 aa5.42□□□□□ -1.54
PTPRD-201ENST00000355233 H0YIN7 160 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 PYGBP11216 843 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ZFXP17010 805 aaPredicted RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 RBM10P98175 930 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 TMEM67Q5HYA8 995 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 FOXD4L5Q5VV16 416 aaPredicted RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 TDRD7Q8NHU6 1098 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 FOXD4L4Q8WXT5 416 aaPredicted RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 SECISBP2LQ93073 1101 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 TEKT2Q9UIF3 430 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 PCSK2P16519 638 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 KRBA2Q6ZNG9 492 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ARHGEF18Q6ZSZ5 1173 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 GPATCH11Q8N954 259 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 CNKSR1Q969H4 720 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 SH3GL3Q99963 347 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 MICAL3Q7RTP6 2002 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ANO9A1A5B4 782 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ESRRBO95718 433 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 AOC3Q16853 763 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 KRT25Q7Z3Z0 450 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 CERKQ8TCT0 537 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 USP26Q9BXU7 913 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ATG3Q9NT62 314 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 IPO11Q9UI26 975 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 MAP3K2Q9Y2U5 619 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 SPATA31A6Q5VVP1 1343 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 SH3TC1Q8TE82 1336 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 CHUKO15111 745 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 KRT3P12035 628 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ADCY2Q08462 1091 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 MUM1L1Q5H9M0 696 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ZNF449Q6P9G9 518 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 CEP57Q86XR8 500 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 CCDC13Q8IYE1 715 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ACSBG1Q96GR2 724 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 DNAJC25Q9H1X3 360 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 QTRT2Q9H974 415 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 VPS18Q9P253 973 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 POLKQ9UBT6 870 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 ZRANB1Q9UGI0 708 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 RSPH14Q9UHP6 348 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 IFIT3O14879 490 aaKnown RBP5.41□□□□□ -1.54
PTPRD-201ENST00000355233 APOA4P06727 396 aa5.41□□□□□ -1.54
PTPRD-201ENST00000355233 HARSP12081 509 aaKnown RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms