RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CCNI2Q6ZMN8 369 aaPredicted RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 NAPBQ9H115 298 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 PIH1D3Q9NQM4 214 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 LUC7L2Q9Y383 392 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 ZC3H4Q9UPT8 1303 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 FAM170AA1A519 330 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 GUCY2FP51841 1108 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 NAP1L1P55209 391 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 MIGA1Q8NAN2 632 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 SRPRBQ9Y5M8 271 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 ZSCAN5CA6NGD5 496 aaPredicted RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 NBPF26B4DH59 902 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 NCK2O43639 380 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 PLEKP08567 350 aaPredicted RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 GPTP24298 496 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 HPDP32754 393 aaPredicted RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 CCDC96Q2M329 555 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 NT5DC1Q5TFE4 455 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 NBPF14Q5TI25 921 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 CDKAL1Q5VV42 579 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 NBPF10Q6P3W6 841 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 NBPF15Q8N660 670 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 TSEN2Q8NCE0 465 aaKnown RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 TACC3Q9Y6A5 838 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 CPDO75976 1380 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 RFX7Q2KHR2 1363 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 ROBO1Q9Y6N7 1651 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 FAM237AA0A1B0GTK4 181 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 TRIM75PA6NK02 468 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 MINDY4BA8MYZ0 360 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 TRIM21P19474 475 aaKnown RBP16.11■□□□□ 0.17
SDC1-201ENST00000254351 SCP2P22307 547 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 PTPROQ16827 1216 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 STRN4Q9NRL3 753 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 SUFUQ9UMX1 484 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 MTMR7Q9Y216 660 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 B4DLN1 442 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 MCM7P33993 719 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 AARSP49588 968 aaKnown RBP eCLIP16.11■□□□□ 0.17
SDC1-201ENST00000254351 CABP4P57796 275 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 PROCA1Q8NCQ7 364 aaPredicted RBP16.11■□□□□ 0.17
SDC1-201ENST00000254351 PLBD2Q8NHP8 589 aa16.11■□□□□ 0.17
SDC1-201ENST00000254351 IQSEC3Q9UPP2 1182 aaPredicted RBP16.11■□□□□ 0.17
SDC1-201ENST00000254351 N4BP2Q86UW6 1770 aaPredicted RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 IPO7O95373 1038 aaKnown RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 SLC4A8Q2Y0W8 1093 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 TCP11X2Q5H9J9 407 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 GBP6Q6ZN66 633 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 MLXIPQ9HAP2 919 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 HEG1Q9ULI3 1381 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 EIF3HO15372 352 aaKnown RBP eCLIP16.1■□□□□ 0.171e-11■■■□□ 17.8
SDC1-201ENST00000254351 FMNL1O95466 1100 aaPredicted RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 PMS1P54277 932 aaKnown RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 SETQ01105 290 aaPredicted RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 CHRNA2Q15822 529 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 NFRKBQ6P4R8 1299 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 LRP10Q7Z4F1 713 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 OR8K1Q8NGG5 319 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 SLC4A4Q9Y6R1 1079 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 MBD4O95243 580 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 ATP6V1AP38606 617 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 PPFIA1Q13136 1202 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 PAK1Q13153 545 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 TCIRG1Q13488 830 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 KANK3Q6NY19 840 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 SUGP1Q8IWZ8 645 aaKnown RBP16.1■□□□□ 0.17
SDC1-201ENST00000254351 TRIML1Q8N9V2 468 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.1■□□□□ 0.17
SDC1-201ENST00000254351 LRWD1Q9UFC0 647 aa16.1■□□□□ 0.17
SDC1-201ENST00000254351 H7C1W4 665 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 ENOX2Q16206 610 aaKnown RBP16.09■□□□□ 0.17
SDC1-201ENST00000254351 TTMPQ5BVD1 217 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 CABLES1Q8TDN4 633 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 CNNM1Q9NRU3 951 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 V9GY48 417 aaPredicted RBP16.09■□□□□ 0.17
SDC1-201ENST00000254351 ZFYP08048 801 aaPredicted RBP16.09■□□□□ 0.17
SDC1-201ENST00000254351 IFT88Q13099 833 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 WTAPQ15007 396 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 LDHAL6AQ6ZMR3 332 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 TOM1L2Q6ZVM7 507 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 MS4A14Q96JA4 679 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 PPANQ9NQ55 473 aaKnown RBP16.09■□□□□ 0.17
SDC1-201ENST00000254351 GRIN2DO15399 1336 aa16.09■□□□□ 0.17
SDC1-201ENST00000254351 NKRFO15226 690 aaKnown RBP eCLIP16.08■□□□□ 0.174e-6■■□□□ 11.7
SDC1-201ENST00000254351 MOCS3O95396 460 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 PRCPP42785 496 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 PTGDRQ13258 359 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 CCDC181Q5TID7 509 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 MFSD6Q6ZSS7 791 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 MAGEB6Q8N7X4 407 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 GIMAP7Q8NHV1 300 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 UBAC1Q9BSL1 405 aa16.08■□□□□ 0.17
SDC1-201ENST00000254351 AHDC1Q5TGY3 1603 aaPredicted RBP16.08■□□□□ 0.17
SDC1-201ENST00000254351 CCDC172P0C7W6 258 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 TUBB2AQ13885 445 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 E2F5Q15329 346 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 WDR59Q6PJI9 974 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 FBXL16Q8N461 479 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 TUBB2BQ9BVA1 445 aa16.08■□□□□ 0.16
SDC1-201ENST00000254351 VIPAS39Q9H9C1 493 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms