RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	RIO2	P40160	425 aa	Known RBP	4.16	□□□□□ -1.74
SRP40	YKR092C	INA22	P40576	216 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	AGX1	P43567	385 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	FDC1	Q03034	503 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	SND1	Q04007	877 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	ARP9	Q05123	467 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	ECM38	Q05902	660 aa	Predicted RBP	4.16	□□□□□ -1.74
SRP40	YKR092C	ARR2	Q06597	130 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	ADF1	Q2V2Q1	113 aa		4.16	□□□□□ -1.74
SRP40	YKR092C	YMR084W	A2P2R3	262 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	SES1	P07284	462 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	ABF1	P14164	731 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	THR1	P17423	357 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	NTH1	P32356	751 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	ASF2	P32448	525 aa	Predicted RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	KRE6	P32486	720 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	TEF4	P36008	412 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	YKL023W	P36103	277 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	DED81	P38707	554 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	LRP1	P38801	184 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	STN1	P38960	494 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	TIF4631	P39935	952 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	ALD5	P40047	520 aa	Known RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	MPS3	P47069	682 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	CTR1	P49573	406 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	UBA2	P52488	636 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	MNP1	P53163	194 aa	Predicted RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	MDR1	P53258	950 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	DIP5	P53388	608 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	ATG4	P53867	494 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	SMX3	P54999	86 aa	Predicted RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	PEX15	Q08215	383 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	APL4	Q12028	832 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	CWC2	Q12046	339 aa	Predicted RBP	4.15	□□□□□ -1.75
SRP40	YKR092C	USV1	Q12132	391 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	SCM3	Q12334	223 aa		4.15	□□□□□ -1.75
SRP40	YKR092C	RPS3	P05750	240 aa	Known RBP	4.14	□□□□□ -1.75
SRP40	YKR092C	YEL076C-A	P0CX16	216 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	YLR464W	P0CX17	216 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	FUB1	P25659	250 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	SRB4	P32569	687 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	YEL043W	P32618	956 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	MAK5	P38112	773 aa	Predicted RBP	4.14	□□□□□ -1.75
SRP40	YKR092C	CTP1	P38152	299 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	CDS1	P38221	457 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	CRG1	P38892	291 aa	RIP-Chip data	4.14	□□□□□ -1.75	not detected
SRP40	YKR092C	YHB1	P39676	399 aa	Known RBP	4.14	□□□□□ -1.75
SRP40	YKR092C	YEL076C	P39971	216 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	KAP123	P40069	1113 aa	Known RBP	4.14	□□□□□ -1.75
SRP40	YKR092C	KHA1	P40309	873 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	ARG2	P40360	574 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	TMA108	P40462	946 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	PRM2	P40534	656 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	IRC5	P43610	853 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	YJL055W	P47044	245 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	CGR1	P53188	120 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	YGR151C	P53287	111 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	VPS9	P54787	451 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	VPS60	Q03390	229 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	TMN2	Q04562	672 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	OPY2	Q06810	360 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	RTT109	Q07794	436 aa		4.14	□□□□□ -1.75
SRP40	YKR092C	NEW1	Q08972	1196 aa	Known RBP	4.14	□□□□□ -1.75
SRP40	YKR092C	MRPL8	P22353	238 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	CDC10	P25342	322 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	RPC53	P25441	422 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	RPN2	P32565	945 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	SSE1	P32589	693 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	TFB1	P32776	642 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	CPR5	P35176	225 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	YKT6	P36015	200 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	GLG1	P36143	616 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	POP7	P38291	140 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	TCD1	P38756	429 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	YHR097C	P38809	366 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	AIM10	P39965	576 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	SEC28	P40509	296 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	MNT3	P40549	630 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	FYV8	P46949	817 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	GND2	P53319	492 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	SQS1	P53866	767 aa	Known RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	IPI3	P53877	555 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	SEC5	P89102	971 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	YDL086W	Q07505	273 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	DNL4	Q08387	944 aa	Predicted RBP	4.13	□□□□□ -1.75
SRP40	YKR092C	TRM8	Q12009	286 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	ICL2	Q12031	575 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	YOL087C	Q99247	1116 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	PSK1	P31374	1356 aa		4.13	□□□□□ -1.75
SRP40	YKR092C	CDC16	P09798	840 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	HEM1	P09950	548 aa	Predicted RBP	4.12	□□□□□ -1.75
SRP40	YKR092C	HMG2	P12684	1045 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	TUP1	P16649	713 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	CDC43	P18898	376 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	TRX1	P22217	103 aa	Known RBP	4.12	□□□□□ -1.75
SRP40	YKR092C	OCA4	P25366	362 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	RAD16	P31244	790 aa		4.12	□□□□□ -1.75
SRP40	YKR092C	TPS2	P31688	896 aa	Known RBP	4.12	□□□□□ -1.75
SRP40	YKR092C	MSS1	P32559	526 aa	Predicted RBP	4.12	□□□□□ -1.75
SRP40	YKR092C	MTC7	P32633	139 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 29.5 ms