RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 A0A087WWV3 80 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TESPA1A2RU30 521 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 SMCO2A6NFE2 343 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 YDJCA8MPS7 323 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ERCC3P19447 782 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TXKP42681 527 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ARMC9Q7Z3E5 817 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 STAG2Q8N3U4 1231 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ENAHQ8N8S7 591 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 CCDC12Q8WUD4 166 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 SPOCK2Q92563 424 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 FAM13BQ9NYF5 915 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 IQCA1LA6NCM1 817 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 BACH1O14867 736 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 TOP1P11387 765 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 ECE1P42892 770 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 MATR3P43243 847 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 IREB2P48200 963 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 FMR1Q06787 632 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 MTMR2Q13614 643 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 UBE2SQ16763 222 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 INF2Q27J81 1249 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DACT2Q5SW24 774 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 C2orf69Q8N8R5 385 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 ACER1Q8TDN7 264 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DHX36Q9H2U1 1008 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 KANSL2Q9H9L4 492 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 GOPCQ9HD26 462 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 FBXO28Q9NVF7 368 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CCPG1Q9ULG6 757 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DLG5Q8TDM6 1919 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 NFKBIEO00221 500 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 TRAF5O00463 557 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CCNT1O60563 726 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 F13A1P00488 732 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CDC25AP30304 524 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 C12orf60Q5U649 245 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 GTF3C6Q969F1 213 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 NMRK2Q9NPI5 230 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 MYO3BQ8WXR4 1341 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 PDE4DIPQ5VU43 2346 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 A0A1B0GVL5 298 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 SPDYE2BA6NHP3 402 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 F5H6K3 240 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 ZBED4O75132 1171 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 ASNSP08243 561 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 SPDYE6P0CI01 402 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 BMP3P12645 472 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 KRT2P35908 639 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 KLRC3Q07444 240 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DGKZQ13574 1117 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CCDC178Q5BJE1 867 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CCDC148Q8NFR7 591 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 CCDC47Q96A33 483 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DHX58Q96C10 678 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 RAVER2Q9HCJ3 691 aaKnown RBP6.23□□□□□ -1.41
VPS13C-209ENST00000560637 ZNF541Q9H0D2 1346 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 MED23Q9ULK4 1368 aa6.23□□□□□ -1.41
VPS13C-209ENST00000560637 DEXIO95424 95 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 ZNF157P51786 506 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 GIMAP6Q6P9H5 292 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 FOXP4Q8IVH2 680 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 RTFDC1Q9BY42 306 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 PXDNLA1KZ92 1463 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L10C9JJH3 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 SH2B2O14492 632 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 CDC27P30260 824 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 CERS3Q8IU89 383 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 CEP57L1Q8IYX8 460 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 CNNM3Q8NE01 707 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 CCDC17Q96LX7 622 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 RIOK1Q9BRS2 568 aaKnown RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 TCP11L1Q9NUJ3 509 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 KCPQ6ZWJ8 1503 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 GPR75-ASB3A0A0A6YYF3 556 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L15C9J2P7 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L13C9JLJ4 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L11C9JVI0 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L18D6R9N7 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L22D6RA61 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L17D6RBQ6 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L19D6RCP7 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L20D6RJB6 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 VEGFAP15692 232 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 GNA11P29992 359 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 MRPL12P52815 198 aaKnown RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L24Q0WX57 530 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 TOB2Q14106 344 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 TMEM266Q2M3C6 531 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 APOBEC3HQ6NTF7 200 aaKnown RBP6.22□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L6PQ6QN14 398 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 FBXO11Q86XK2 927 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 SPC24Q8NBT2 197 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 HOOK2Q96ED9 719 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 NUP62CLQ9H1M0 184 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 AS3MTQ9HBK9 375 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 POLD4Q9HCU8 107 aa6.22□□□□□ -1.41
VPS13C-209ENST00000560637 RIC1Q4ADV7 1423 aa6.21□□□□□ -1.41
VPS13C-209ENST00000560637 FAM170AA1A519 330 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms