RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 FUT2Q10981 343 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 CMTR1Q8N1G2 835 aaKnown RBP19.41■□□□□ 0.7
LDLR-206ENST00000557958 CLRN2A0PK11 232 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 SLC39A14Q15043 492 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 UVSSAQ2YD98 709 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 RILPL1Q5EBL4 403 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 PCDHA7Q9UN72 937 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 CDK5RAP2Q96SN8 1893 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 ARFGEF1Q9Y6D6 1849 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 ZNF541Q9H0D2 1346 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 PLEKHA8P1O95397 391 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 GMPSP49915 693 aaPredicted RBP19.4■□□□□ 0.7
LDLR-206ENST00000557958 ZSCAN29Q8IWY8 852 aaPredicted RBP19.4■□□□□ 0.7
LDLR-206ENST00000557958 FSIP1Q8NA03 581 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 IL17RBQ9NRM6 502 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 RNF181Q9P0P0 153 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 V9GY48 417 aaPredicted RBP19.4■□□□□ 0.7
LDLR-206ENST00000557958 FOCADQ5VW36 1801 aa19.4■□□□□ 0.7
LDLR-206ENST00000557958 CNTNAP5Q8WYK1 1306 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 SOCS7O14512 581 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 PPP6R2O75170 966 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 RBM43Q6ZSC3 357 aaKnown RBP19.39■□□□□ 0.7
LDLR-206ENST00000557958 SLC44A5Q8NCS7 719 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 NEDD1Q8NHV4 660 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 TRIM44Q96DX7 344 aaPredicted RBP19.39■□□□□ 0.7
LDLR-206ENST00000557958 SWAP70Q9UH65 585 aa19.39■□□□□ 0.7
LDLR-206ENST00000557958 TCP10L2B9ZVM9 353 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 HLA-DOAP06340 250 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 CAMK4Q16566 473 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 ZFPM1Q8IX07 1006 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 RNF214Q8ND24 703 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 LZTS2Q9BRK4 669 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 FUCA2Q9BTY2 467 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 STX8Q9UNK0 236 aa19.39■□□□□ 0.69
LDLR-206ENST00000557958 MYH1P12882 1939 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 SPDYE2BA6NHP3 402 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 BTBD18B2RXH4 712 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 UBE2Q2LH0YL09 131 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 SPDYE6P0CI01 402 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 KRT2P35908 639 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 GRM4Q14833 912 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 PPP1R9BQ96SB3 815 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 OSBPL5Q9H0X9 879 aaPredicted RBP19.38■□□□□ 0.69
LDLR-206ENST00000557958 VEZTQ9HBM0 779 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 TMOD2Q9NZR1 351 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 KCNJ14Q9UNX9 436 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 CEP131Q9UPN4 1083 aa19.38■□□□□ 0.69
LDLR-206ENST00000557958 ZNF646O15015 1829 aaPredicted RBP19.37■□□□□ 0.69
LDLR-206ENST00000557958 PKN1Q16512 942 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 SASS6Q6UVJ0 657 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 MICALL2Q8IY33 904 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 SRBD1Q8N5C6 995 aaKnown RBP19.37■□□□□ 0.69
LDLR-206ENST00000557958 PHF20Q9BVI0 1012 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 MYOZ2Q9NPC6 264 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 CNOT7Q9UIV1 285 aaKnown RBP19.37■□□□□ 0.69
LDLR-206ENST00000557958 PLIN4Q96Q06 1357 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 CAVIN2O95810 425 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 SCG2P13521 617 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 PPP4R3BQ5MIZ7 849 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.37■□□□□ 0.69
LDLR-206ENST00000557958 SERPINB13Q9UIV8 391 aa19.37■□□□□ 0.69
LDLR-206ENST00000557958 MYO1BO43795 1136 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 RPS12P25398 132 aaKnown RBP19.36■□□□□ 0.69
LDLR-206ENST00000557958 NBPF9Q3BBW0 867 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 C9orf131Q5VYM1 1079 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 SAMD7Q7Z3H4 446 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 FAM177A1Q8N128 213 aaPredicted RBP19.36■□□□□ 0.69
LDLR-206ENST00000557958 GOLPH3LQ9H4A5 285 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 VPS54Q9P1Q0 977 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 ZNF70Q9UC06 446 aaPredicted RBP19.36■□□□□ 0.69
LDLR-206ENST00000557958 FAM198AQ9UFP1 575 aa19.36■□□□□ 0.69
LDLR-206ENST00000557958 MYH6P13533 1939 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 TOP1P11387 765 aaKnown RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 CMA1P23946 247 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 TYRO3Q06418 890 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 PFKFB3Q16875 520 aaPredicted RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 TBC1D10BQ4KMP7 808 aaPredicted RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 ENGASEQ8NFI3 743 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 TMEM47Q9BQJ4 181 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 DHX36Q9H2U1 1008 aaKnown RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 SCAF8Q9UPN6 1271 aaKnown RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 CALML3P27482 149 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 GABPAQ06546 454 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 SNW1Q13573 536 aaKnown RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 CKAP2LQ8IYA6 745 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 IDI2Q9BXS1 227 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 SH3GLB2Q9NR46 395 aa19.35■□□□□ 0.69
LDLR-206ENST00000557958 NOL7Q9UMY1 257 aaKnown RBP19.35■□□□□ 0.69
LDLR-206ENST00000557958 PSME4Q14997 1843 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 WNT10BO00744 389 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 CUTAO60888 179 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 BMP15O95972 392 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 EGFRP00533 1210 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 SLURP2P0DP57 97 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 PTPAQ15257 358 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 FMR1NBQ8N0W7 255 aaPredicted RBP19.34■□□□□ 0.69
LDLR-206ENST00000557958 EHD4Q9H223 541 aa19.34■□□□□ 0.69
LDLR-206ENST00000557958 RRAGDQ9NQL2 400 aaPredicted RBP19.34■□□□□ 0.69
LDLR-206ENST00000557958 DDTLA6NHG4 134 aaPredicted RBP19.33■□□□□ 0.69
LDLR-206ENST00000557958 NPM3O75607 178 aaKnown RBP19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms