RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	EAF1	Q96JC9	268 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-238	ENST00000534296	DHRS1	Q96LJ7	313 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	GPR62	Q9BZJ7	368 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	CNNM2	Q9H8M5	875 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	SEMA3G	Q9NS98	782 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	DUSP13	Q9UII6	198 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	ZNRF3	Q9ULT6	936 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	RNASE1	P07998	156 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	TXK	P42681	527 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	AFM	P43652	599 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	GNL2	Q13823	731 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	CREG2	Q8IUH2	290 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	LRRN4CL	Q8ND94	238 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	ENOX1	Q8TC92	643 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	DHX38	Q92620	1227 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	GPRASP2	Q96D09	838 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	ATG4C	Q96DT6	458 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	ALPK1	Q96QP1	1244 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	TM9SF2	Q99805	663 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	MKRN2	Q9H000	416 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	MBNL3	Q9NUK0	354 aa	Known RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-238	ENST00000534296	RNF114	Q9Y508	228 aa		4.6	□□□□□ -1.67
CD44-238	ENST00000534296	SSU72P8	A0A1W2PR75	194 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	DNAJA2	O60884	412 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	NME1	P15531	152 aa	Known RBP	4.59	□□□□□ -1.67
CD44-238	ENST00000534296	ITGB5	P18084	799 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	HDLBP	Q00341	1268 aa	Known RBP	4.59	□□□□□ -1.67
CD44-238	ENST00000534296	PAK2	Q13177	524 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	TSPYL5	Q86VY4	417 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-238	ENST00000534296	WFDC3	Q8IUB2	231 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	FLAD1	Q8NFF5	587 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296		Q96M66	194 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	TGIF2	Q9GZN2	237 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	SLAMF8	Q9P0V8	285 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	SLC12A7	Q9Y666	1083 aa		4.59	□□□□□ -1.67
CD44-238	ENST00000534296	CNTNAP4	Q9C0A0	1308 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	TNFRSF10C	O14798	259 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	UBOX5	O94941	541 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	ENDOU	P21128	410 aa	Known RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	RACK1	P63244	317 aa	Known RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	EGR3	Q06889	387 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	DUSP4	Q13115	394 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	NMI	Q13287	307 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	KCNMB1	Q16558	191 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	BBS9	Q3SYG4	887 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	LCE3B	Q5TA77	95 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	NBPF12	Q5TAG4	269 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	INTS3	Q68E01	1043 aa	Known RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	VPS37D	Q86XT2	251 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	TAB3	Q8N5C8	712 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	OR6P1	Q8NGX9	317 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	CPLX3	Q8WVH0	158 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	SMARCC1	Q92922	1105 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	SLC6A18	Q96N87	628 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	PRDM7	Q9NQW5	492 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	KIAA1522	Q9P206	1035 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-238	ENST00000534296	ADAMTS6	Q9UKP5	1117 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	INPP5F	Q9Y2H2	1132 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	PCDHB12	Q9Y5F1	795 aa		4.58	□□□□□ -1.68
CD44-238	ENST00000534296	UNCX	A6NJT0	531 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	GUCY2C	P25092	1073 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	POLR2B	P30876	1174 aa	Known RBP	4.57	□□□□□ -1.68
CD44-238	ENST00000534296	GDNF	P39905	211 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	METTL16	Q86W50	562 aa	Known RBP	4.57	□□□□□ -1.68
CD44-238	ENST00000534296	ZSWIM9	Q86XI8	627 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	OXR1	Q8N573	874 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	SYTL5	Q8TDW5	730 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-238	ENST00000534296	FAM168A	Q92567	244 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	DUSP15	Q9H1R2	295 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-238	ENST00000534296	FAM53C	Q9NYF3	392 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	TMEM59L	Q9UK28	342 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	FBXL21	Q9UKT6	434 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	STRIP2	Q9ULQ0	834 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	PPT2	Q9UMR5	302 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	EFR3B	Q9Y2G0	817 aa		4.57	□□□□□ -1.68
CD44-238	ENST00000534296	LRRN2	O75325	713 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	PAPLN	O95428	1278 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	SRF	P11831	508 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	TCF3	P15923	654 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	ERCC5	P28715	1186 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	RBM25	P49756	843 aa	Known RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	EIF6	P56537	245 aa	Known RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	PCBP3	P57721	371 aa	Known RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	GAB4	Q2WGN9	574 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	C9orf131	Q5VYM1	1079 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	TTC6	Q86TZ1	520 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	CCDC144CP	Q8IYA2	1237 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	ZNF655	Q8N720	491 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	RBBP8NL	Q8NC74	664 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	RASGRP4	Q8TDF6	673 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	KIRREL1	Q96J84	757 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	SEC16B	Q96JE7	1060 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	CAPN10	Q9HC96	672 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	GINM1	Q9NU53	330 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	SUCO	Q9UBS9	1254 aa	Known RBP	4.56	□□□□□ -1.68
CD44-238	ENST00000534296	CTNND2	Q9UQB3	1225 aa		4.56	□□□□□ -1.68
CD44-238	ENST00000534296	ESR1	P03372	595 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	GJA8	P48165	433 aa		4.55	□□□□□ -1.68
CD44-238	ENST00000534296	SOX9	P48436	509 aa		4.55	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms