RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 CILP2Q8IUL8 1156 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 ABHD4Q8TB40 342 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 GIPC2Q8TF65 315 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 VWCEQ96DN2 955 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 PPP1R16BQ96T49 567 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 ADAMTS10Q9H324 1103 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 PCDHA11Q9Y5I1 949 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 RGS13O14921 159 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 TLR3O15455 904 aaKnown RBP9.1□□□□□ -0.95
NUP54-209ENST00000510569 ATE1O95260 518 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 HK2P52789 917 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 ERVFC1P60507 584 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 MLECQ14165 292 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 ZNF326Q5BKZ1 582 aaKnown RBP9.1□□□□□ -0.95
NUP54-209ENST00000510569 PHACTR4Q8IZ21 702 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 KIF2CQ99661 725 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 SP110Q9HB58 689 aa9.1□□□□□ -0.95
NUP54-209ENST00000510569 SHISA3A0PJX4 238 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 ZGLP1P0C6A0 271 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 PDZD8Q8NEN9 1154 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 MYLIPQ8WY64 445 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 BRMS1Q9HCU9 246 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 GMIPQ9P107 970 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 PCDHB14Q9Y5E9 798 aa9.09□□□□□ -0.95
NUP54-209ENST00000510569 SLC22A31A6NKX4 558 aa9.08□□□□□ -0.96
NUP54-209ENST00000510569 LTKP29376 864 aa9.08□□□□□ -0.96
NUP54-209ENST00000510569 CRKP46108 304 aa9.08□□□□□ -0.96
NUP54-209ENST00000510569 HS2ST1Q7LGA3 356 aa9.08□□□□□ -0.96
NUP54-209ENST00000510569 ADAMTS1Q9UHI8 967 aa9.08□□□□□ -0.96
NUP54-209ENST00000510569 UBOX5O94941 541 aa9.07□□□□□ -0.96
NUP54-209ENST00000510569 FBXO15Q8NCQ5 510 aaPredicted RBP9.07□□□□□ -0.96
NUP54-209ENST00000510569 ZNF296Q8WUU4 475 aaPredicted RBP9.07□□□□□ -0.96
NUP54-209ENST00000510569 NSUN3Q9H649 340 aaKnown RBP9.07□□□□□ -0.96
NUP54-209ENST00000510569 EHMT1Q9H9B1 1298 aa9.07□□□□□ -0.96
NUP54-209ENST00000510569 GGT7Q9UJ14 662 aa9.07□□□□□ -0.96
NUP54-209ENST00000510569 KRT1P04264 644 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 RAP1GAPP47736 663 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 RNF4P78317 190 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 NR0B2Q15466 257 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 ARSHQ5FYA8 562 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 OVOS1Q6IE37 1185 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 SYDE1Q6ZW31 735 aaPredicted RBP9.06□□□□□ -0.96
NUP54-209ENST00000510569 LILRA2Q8N149 483 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 ZNF281Q9Y2X9 895 aa9.06□□□□□ -0.96
NUP54-209ENST00000510569 RAG1P15918 1043 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 GBP1P32455 592 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 TEKQ02763 1124 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 CDCP2Q5VXM1 449 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 SPOCD1Q6ZMY3 1216 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 ENOX1Q8TC92 643 aaKnown RBP9.05□□□□□ -0.96
NUP54-209ENST00000510569 DHX38Q92620 1227 aaKnown RBP9.05□□□□□ -0.96
NUP54-209ENST00000510569 BCL11AQ9H165 835 aa9.05□□□□□ -0.96
NUP54-209ENST00000510569 FITM1A5D6W6 292 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 REXO1Q8N1G1 1221 aaKnown RBP9.04□□□□□ -0.96
NUP54-209ENST00000510569 OXR1Q8N573 874 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 SYTL5Q8TDW5 730 aaPredicted RBP9.04□□□□□ -0.96
NUP54-209ENST00000510569 DIRC2Q96SL1 478 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 RNF32Q9H0A6 362 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.04□□□□□ -0.96
NUP54-209ENST00000510569 EPB41L4BQ9H329 900 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 CNNM2Q9H8M5 875 aa9.04□□□□□ -0.96
NUP54-209ENST00000510569 TRHRP34981 398 aaPredicted RBP9.03□□□□□ -0.96
NUP54-209ENST00000510569 NMIQ13287 307 aaPredicted RBP9.03□□□□□ -0.96
NUP54-209ENST00000510569 KRTAP19-4Q3LI73 84 aa9.03□□□□□ -0.96
NUP54-209ENST00000510569 LDLRAD1Q5T700 205 aa9.03□□□□□ -0.96
NUP54-209ENST00000510569 HDAC8Q9BY41 377 aa9.03□□□□□ -0.96
NUP54-209ENST00000510569 CLEC16AQ2KHT3 1053 aa9.02□□□□□ -0.97
NUP54-209ENST00000510569 TIGD5Q53EQ6 642 aa9.02□□□□□ -0.97
NUP54-209ENST00000510569 NBPF12Q5TAG4 269 aaPredicted RBP9.02□□□□□ -0.97
NUP54-209ENST00000510569 DCP1AQ9NPI6 582 aaPredicted RBP9.02□□□□□ -0.97
NUP54-209ENST00000510569 UBP1Q9NZI7 540 aa9.02□□□□□ -0.97
NUP54-209ENST00000510569 MEIS3P2A8K0S8 358 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 POLR2BP30876 1174 aaKnown RBP9.01□□□□□ -0.97
NUP54-209ENST00000510569 CCNFP41002 786 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 CHMP4BP1P59074 171 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 CHRNEQ04844 493 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 RAD51AP2Q09MP3 1159 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 APOBRQ0VD83 1088 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 DUSP4Q13115 394 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 NLRC3Q7RTR2 1065 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 IRF2BP1Q8IU81 584 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 DAGLBQ8NCG7 672 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 LINC01599Q8WXQ3 324 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 SYTL4Q96C24 671 aaPredicted RBP9.01□□□□□ -0.97
NUP54-209ENST00000510569 ATG4CQ96DT6 458 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 TOX2Q96NM4 488 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 G6PC3Q9BUM1 346 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 NT5C1AQ9BXI3 368 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 ASCC2Q9H1I8 757 aaPredicted RBP9.01□□□□□ -0.97
NUP54-209ENST00000510569 C19orf44Q9H6X5 657 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 EBF1Q9UH73 591 aa9.01□□□□□ -0.97
NUP54-209ENST00000510569 MED14OSP0DP75 135 aa9□□□□□ -0.97
NUP54-209ENST00000510569 ZNF16P17020 682 aaPredicted RBP9□□□□□ -0.97
NUP54-209ENST00000510569 CLCQ05315 142 aa9□□□□□ -0.97
NUP54-209ENST00000510569 NBPF9Q3BBW0 867 aa9□□□□□ -0.97
NUP54-209ENST00000510569 SEZ6Q53EL9 994 aa9□□□□□ -0.97
NUP54-209ENST00000510569 LCE1DQ5T752 114 aa9□□□□□ -0.97
NUP54-209ENST00000510569 RNF111Q6ZNA4 994 aa9□□□□□ -0.97
NUP54-209ENST00000510569 C1QL4Q86Z23 238 aa9□□□□□ -0.97
NUP54-209ENST00000510569 SLITRK4Q8IW52 837 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms