RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	TMOD4	Q9NZQ9	345 aa		13.99	□□□□□ -0.17
CUX1-210	ENST00000497815	TMX2	Q9Y320	296 aa		13.99	□□□□□ -0.17
CUX1-210	ENST00000497815	PHIP	Q8WWQ0	1821 aa		13.99	□□□□□ -0.17
CUX1-210	ENST00000497815		A0A0G2JLL6	359 aa	Predicted RBP	13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	MANSC4	A6NHS7	340 aa	Predicted RBP	13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	C19orf81	C9J6K1	198 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	CETP	P11597	493 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	RPS6KB1	P23443	525 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	FGD1	P98174	961 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	WTAP	Q15007	396 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	CCDC178	Q5BJE1	867 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	IFIT1B	Q5T764	474 aa	Known RBP	13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	RCSD1	Q6JBY9	416 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	USP17L2	Q6R6M4	530 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	BRI3BP	Q8WY22	251 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	MS4A4A	Q96JQ5	239 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	KAT14	Q9H8E8	782 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	SENP2	Q9HC62	589 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	GOPC	Q9HD26	462 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	EMILIN3	Q9NT22	766 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	ISY1	Q9ULR0	285 aa	Known RBP	13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	CYP46A1	Q9Y6A2	500 aa		13.98	□□□□□ -0.17
CUX1-210	ENST00000497815	TOP1	P11387	765 aa	Known RBP	13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	RBM25	P49756	843 aa	Known RBP	13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	USP14	P54578	494 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	EXOSC10	Q01780	885 aa	Known RBP	13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	SEC23A	Q15436	765 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	KIAA1755	Q5JYT7	1200 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	NFXL1	Q6ZNB6	911 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	RUFY3	Q7L099	469 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	DGKH	Q86XP1	1220 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	IGDCC4	Q8TDY8	1250 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	MKL1	Q969V6	931 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	TMEM87B	Q96K49	555 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	TTC14	Q96N46	770 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	VCPKMT	Q9H867	229 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815	ZSWIM6	Q9HCJ5	1215 aa		13.97	□□□□□ -0.17
CUX1-210	ENST00000497815		F5H6K3	240 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	SH2B2	O14492	632 aa	Predicted RBP	13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	NDUFB10	O96000	172 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	NOV	P48745	357 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	KLRC3	Q07444	240 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	SREBF2	Q12772	1141 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	MOGS	Q13724	837 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	SH3D19	Q5HYK7	790 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	TREML2	Q5T2D2	321 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815		Q6ZUG5	572 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	FASTKD5	Q7L8L6	764 aa	Known RBP	13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	RASGRP2	Q7LDG7	609 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	TBC1D32	Q96NH3	1257 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	NUP88	Q99567	741 aa	Predicted RBP	13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	TM6SF1	Q9BZW5	370 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	LY9	Q9HBG7	655 aa		13.96	□□□□□ -0.17
CUX1-210	ENST00000497815	WDR19	Q8NEZ3	1342 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	CCDC69	A6NI79	296 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	BTBD19	C9JJ37	291 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	VCAM1	P19320	739 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	SLFN13	Q68D06	897 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	GPAT2	Q6NUI2	795 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	FAM43A	Q8N2R8	423 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	PNMA1	Q8ND90	353 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	ANKS1A	Q92625	1134 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	PTPN18	Q99952	460 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	PDRG1	Q9NUG6	133 aa		13.95	□□□□□ -0.18
CUX1-210	ENST00000497815	TESPA1	A2RU30	521 aa	Predicted RBP	13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	DSG3	P32926	999 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	MAP2K2	P36507	400 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	NEK4	P51957	841 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	INHBE	P58166	350 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	CCDC96	Q2M329	555 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	FAM83B	Q5T0W9	1011 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	RAB11FIP4	Q86YS3	637 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	IFNL1	Q8IU54	200 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	DNAJC5G	Q8N7S2	189 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	GMCL1P1	Q8NEA9	526 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	LPAR1	Q92633	364 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	BRF1	Q92994	677 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	C12orf42	Q96LP6	360 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	KIF2C	Q99661	725 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	MTA3	Q9BTC8	594 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	MYL10	Q9BUA6	226 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	TANGO6	Q9C0B7	1094 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	SYNPO2	Q9UMS6	1093 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	AGTPBP1	Q9UPW5	1226 aa		13.94	□□□□□ -0.18
CUX1-210	ENST00000497815	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	PDHX	O00330	501 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	LIFR	P42702	1097 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	SLC1A4	P43007	532 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	TM4SF4	P48230	202 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	APOBR	Q0VD83	1088 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	KCTD1	Q719H9	257 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	NOL8	Q76FK4	1167 aa	Known RBP	13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	CATIP	Q7Z7H3	387 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	ANKRD23	Q86SG2	305 aa		13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms