RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TSPY3P0CV98 308 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 TSPY8P0CW00 308 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 IRX3P78415 501 aaPredicted RBP18.83■□□□□ 0.6
UPF3A-208ENST00000484246 TFAP4Q01664 338 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L24Q0WX57 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 IMMTQ16891 758 aaKnown RBP18.83■□□□□ 0.6
UPF3A-208ENST00000484246 FAM110CQ1W6H9 321 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 LBX2Q6XYB7 198 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 SMCR8Q8TEV9 937 aaPredicted RBP18.83■□□□□ 0.6
UPF3A-208ENST00000484246 MKL1Q969V6 931 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 CEP95Q96GE4 821 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 ESYT1Q9BSJ8 1104 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 WDR46O15213 610 aaKnown RBP18.82■□□□□ 0.6
UPF3A-208ENST00000484246 TTLL1O95922 423 aa18.82■□□□□ 0.6
UPF3A-208ENST00000484246 HAND2P61296 217 aa18.82■□□□□ 0.6
UPF3A-208ENST00000484246 LACTBP83111 547 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-208ENST00000484246 ZYXQ15942 572 aaKnown RBP18.82■□□□□ 0.6
UPF3A-208ENST00000484246 PKN2Q16513 984 aaKnown RBP18.82■□□□□ 0.6
UPF3A-208ENST00000484246 CATSPERGQ6ZRH7 1159 aa18.82■□□□□ 0.6
UPF3A-208ENST00000484246 MORF4L1Q9UBU8 362 aa18.82■□□□□ 0.6
UPF3A-208ENST00000484246 CPA4Q9UI42 421 aa18.82■□□□□ 0.6
UPF3A-208ENST00000484246 LAMA4Q16363 1823 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 MYPNQ86TC9 1320 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 TSPY2A6NKD2 308 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 CDC45O75419 566 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 HERVK_113P62684 666 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 ARHGEF6Q15052 776 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 FAM47AQ5JRC9 791 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 KIAA1755Q5JYT7 1200 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 MFSD6Q6ZSS7 791 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 MAP4K1Q92918 833 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 RPAP3Q9H6T3 665 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-208ENST00000484246 GOPCQ9HD26 462 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 TCP11L1Q9NUJ3 509 aa18.81■□□□□ 0.6
UPF3A-208ENST00000484246 GNRH1P01148 92 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 PTH1RQ03431 593 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 GMCL1P1Q8NEA9 526 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 CD99L2Q8TCZ2 262 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 INCENPQ9NQS7 918 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 IL17RBQ9NRM6 502 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 MYH8P13535 1937 aa18.8■□□□□ 0.6
UPF3A-208ENST00000484246 NEDD4P46934 1319 aa18.79■□□□□ 0.6
UPF3A-208ENST00000484246 RANBP6O60518 1105 aaKnown RBP18.79■□□□□ 0.6
UPF3A-208ENST00000484246 CAP1Q01518 475 aa18.79■□□□□ 0.6
UPF3A-208ENST00000484246 OTOP1Q7RTM1 612 aa18.79■□□□□ 0.6
UPF3A-208ENST00000484246 ESR2Q92731 530 aa18.79■□□□□ 0.6
UPF3A-208ENST00000484246 P2RX7Q99572 595 aaKnown RBP18.79■□□□□ 0.6
UPF3A-208ENST00000484246 LSG1Q9H089 658 aaKnown RBP18.79■□□□□ 0.6
UPF3A-208ENST00000484246 NDUFB10O96000 172 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 ATP2B2Q01814 1243 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 KIF22Q14807 665 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 CASC1Q6TDU7 716 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 MCOLN1Q9GZU1 580 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 CNNM2Q9H8M5 875 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 EFCC1Q9HA90 598 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 CLIP2Q9UDT6 1046 aa18.78■□□□□ 0.6
UPF3A-208ENST00000484246 SPDYE16A6NNV3 312 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-208ENST00000484246 F5H6K3 240 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 PRMT2P55345 433 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 KLRC3Q07444 240 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 FBXO46Q6PJ61 603 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-208ENST00000484246 POTEEQ6S8J3 1075 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 KIAA1211Q6ZU35 1233 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 ANKRD13CQ8N6S4 541 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 RABGAP1Q9Y3P9 1069 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 TRIM17Q9Y577 477 aa18.77■□□□□ 0.6
UPF3A-208ENST00000484246 CYP21A2P08686 494 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 CTGFP29279 349 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 FCGRTP55899 365 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 COG2Q14746 738 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 RRP12Q5JTH9 1297 aaKnown RBP18.76■□□□□ 0.59
UPF3A-208ENST00000484246 SPICE1Q8N0Z3 855 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 TTC14Q96N46 770 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 KRT23Q9C075 422 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 TOMM22Q9NS69 142 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 RBPJLQ9UBG7 517 aa18.76■□□□□ 0.59
UPF3A-208ENST00000484246 RBM8AQ9Y5S9 174 aaKnown RBP18.76■□□□□ 0.59
UPF3A-208ENST00000484246 CASP8AP2Q9UKL3 1982 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 LRRC47Q8N1G4 583 aaKnown RBP18.75■□□□□ 0.59
UPF3A-208ENST00000484246 MB21D1Q8N884 522 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 NKX2-3Q8TAU0 364 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 GMCL1Q96IK5 515 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 TRIM47Q96LD4 638 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 TANGO6Q9C0B7 1094 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 ARHGAP39Q9C0H5 1083 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 TXNRD2Q9NNW7 524 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 HOXC10Q9NYD6 342 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 ADAMTS5Q9UNA0 930 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 STX8Q9UNK0 236 aa18.75■□□□□ 0.59
UPF3A-208ENST00000484246 A0A0G2JMZ2 1700 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 NMT2O60551 498 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 CNMDO75829 334 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 SLC34A2O95436 690 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 TOP1P11387 765 aaKnown RBP18.74■□□□□ 0.59
UPF3A-208ENST00000484246 DSG3P32926 999 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 PSMC4P43686 418 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 ERVK-9P63128 1117 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 ERVK-24P63145 666 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 CCDC178Q5BJE1 867 aa18.74■□□□□ 0.59
UPF3A-208ENST00000484246 RCSD1Q6JBY9 416 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms