RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MYH8P13535 1937 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 ZMYM6O95789 1325 aa18.52■□□□□ 0.56
HMGA1-206ENST00000478214 NEFLP07196 543 aa18.52■□□□□ 0.56
HMGA1-206ENST00000478214 LPAR1Q92633 364 aa18.52■□□□□ 0.56
HMGA1-206ENST00000478214 IL25Q9H293 177 aa18.52■□□□□ 0.56
HMGA1-206ENST00000478214 TSPY3P0CV98 308 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 TSPY8P0CW00 308 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 HOXD10P28358 340 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 HAND2P61296 217 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 TFAP4Q01664 338 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 NEDD1Q8NHV4 660 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 CEP95Q96GE4 821 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 CCDC136Q96JN2 1154 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 PAGR1Q9BTK6 254 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 TANGO6Q9C0B7 1094 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 NYAP2Q9P242 653 aa18.51■□□□□ 0.55
HMGA1-206ENST00000478214 SPDYE16A6NNV3 312 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-206ENST00000478214 TNPO2O14787 897 aaKnown RBP18.5■□□□□ 0.55
HMGA1-206ENST00000478214 CHMLP26374 656 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 PRMT2P55345 433 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 PRKCZQ05513 592 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 Q3C1V9 767 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 GPRC5AQ8NFJ5 357 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 GTF3C2Q8WUA4 911 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-206ENST00000478214 MTMR4Q9NYA4 1195 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 CLIP2Q9UDT6 1046 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 GABRQQ9UN88 632 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 PLIN4Q96Q06 1357 aa18.5■□□□□ 0.55
HMGA1-206ENST00000478214 MYPNQ86TC9 1320 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 GREB1LQ9C091 1923 aaPredicted RBP18.49■□□□□ 0.55
HMGA1-206ENST00000478214 RAD21O60216 631 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 CNMDO75829 334 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 FGRP09769 529 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 ERVK-9P63128 1117 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 ERVK-24P63145 666 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 COG2Q14746 738 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 NBPF3Q9H094 633 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 GOPCQ9HD26 462 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 RABGAP1Q9Y3P9 1069 aa18.49■□□□□ 0.55
HMGA1-206ENST00000478214 TSPY2A6NKD2 308 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 WDR46O15213 610 aaKnown RBP18.48■□□□□ 0.55
HMGA1-206ENST00000478214 ORC4O43929 436 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 RANBP6O60518 1105 aaKnown RBP18.48■□□□□ 0.55
HMGA1-206ENST00000478214 CENPBP07199 599 aaPredicted RBP18.48■□□□□ 0.55
HMGA1-206ENST00000478214 LBX2Q6XYB7 198 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 RAET1EQ8TD07 263 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 ARMC5Q96C12 935 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 DSCC1Q9BVC3 393 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 TOMM22Q9NS69 142 aa18.48■□□□□ 0.55
HMGA1-206ENST00000478214 CENPFP49454 3210 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 F5H6K3 240 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 FLOT1O75955 427 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 TTLL1O95922 423 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 FLT3LGP49771 235 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 SOX10P56693 466 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 KLRC3Q07444 240 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 SLC9C1Q4G0N8 1177 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 RRP12Q5JTH9 1297 aaKnown RBP18.47■□□□□ 0.55
HMGA1-206ENST00000478214 FAM83BQ5T0W9 1011 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 TBC1D10CQ8IV04 446 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 LRRC47Q8N1G4 583 aaKnown RBP18.47■□□□□ 0.55
HMGA1-206ENST00000478214 SH3TC2Q8TF17 1288 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 MKL1Q969V6 931 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 COA7Q96BR5 231 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 NUP88Q99567 741 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-206ENST00000478214 PORCNQ9H237 461 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 FBXO28Q9NVF7 368 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 HOXC10Q9NYD6 342 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 BTBD7Q9P203 1132 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 RAD50Q92878 1312 aa18.47■□□□□ 0.55
HMGA1-206ENST00000478214 ZNF213O14771 459 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 NMT2O60551 498 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 NDUFB10O96000 172 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 DSG3P32926 999 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 AKNAD1Q5T1N1 836 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 SAMD1Q6SPF0 538 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-206ENST00000478214 STAG1Q8WVM7 1258 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 RUFY2Q8WXA3 655 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 IL17RBQ9NRM6 502 aa18.46■□□□□ 0.55
HMGA1-206ENST00000478214 MFSD6Q6ZSS7 791 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 NKX2-3Q8TAU0 364 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 ATG4CQ96DT6 458 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 ZNF333Q96JL9 665 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 GJD2Q9UKL4 321 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 STX8Q9UNK0 236 aa18.45■□□□□ 0.54
HMGA1-206ENST00000478214 SGSM2O43147 1006 aa18.44■□□□□ 0.54
HMGA1-206ENST00000478214 MAPK4P31152 587 aa18.44■□□□□ 0.54
HMGA1-206ENST00000478214 GRK4P32298 578 aa18.44■□□□□ 0.54
HMGA1-206ENST00000478214 NBPF11Q86T75 865 aa18.44■□□□□ 0.54
HMGA1-206ENST00000478214 CCAR1Q8IX12 1150 aaKnown RBP18.44■□□□□ 0.54
HMGA1-206ENST00000478214 RNF41Q9H4P4 317 aaPredicted RBP18.44■□□□□ 0.54
HMGA1-206ENST00000478214 CTNNA3Q9UI47 895 aa18.44■□□□□ 0.54
HMGA1-206ENST00000478214 ADCY3O60266 1144 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 MYCP01106 439 aaPredicted RBP18.43■□□□□ 0.54
HMGA1-206ENST00000478214 CCNA1P78396 465 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 PTH1RQ03431 593 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 IRF5Q13568 498 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 PPP4R3BQ5MIZ7 849 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 SYNPO2Q9UMS6 1093 aa18.43■□□□□ 0.54
HMGA1-206ENST00000478214 MGAMO43451 1857 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms