RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 IQUBQ8NA54 791 aa11.86□□□□□ -0.51
CD44-210ENST00000434472 ZNF397Q8NF99 534 aaPredicted RBP11.86□□□□□ -0.51
CD44-210ENST00000434472 SRRTQ9BXP5 876 aaKnown RBP11.86□□□□□ -0.51
CD44-210ENST00000434472 TCP11L1Q9NUJ3 509 aa11.86□□□□□ -0.51
CD44-210ENST00000434472 MCM9Q9NXL9 1143 aa11.86□□□□□ -0.51
CD44-210ENST00000434472 SRP68Q9UHB9 627 aaKnown RBP11.86□□□□□ -0.51
CD44-210ENST00000434472 BAZ2AQ9UIF9 1905 aaKnown RBP11.85□□□□□ -0.51
CD44-210ENST00000434472 IRS2Q9Y4H2 1338 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 ROBO3Q96MS0 1386 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 CCDC88AQ3V6T2 1871 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 A0A1B0GTH6 734 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 FAM205CA6NFA0 338 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 TMEM232C9JQI7 657 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 SMIM22K7EJ46 135 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 LONP1P36776 959 aaKnown RBP11.85□□□□□ -0.51
CD44-210ENST00000434472 PPP4CP60510 307 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 DPYDQ12882 1025 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 PTGDRQ13258 359 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 GRAPQ13588 217 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 NPY5RQ15761 445 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 FILIP1LQ4L180 1135 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 EARS2Q5JPH6 523 aaKnown RBP11.85□□□□□ -0.51
CD44-210ENST00000434472 FAM47AQ5JRC9 791 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 C12orf60Q5U649 245 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 SYT10Q6XYQ8 523 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 USP49Q70CQ1 688 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 ZNF804AQ7Z570 1209 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 GRAMD1CQ8IYS0 662 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 GRAPLQ8TC17 118 aaPredicted RBP11.85□□□□□ -0.51
CD44-210ENST00000434472 NGLY1Q96IV0 654 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 ZNF287Q9HBT7 754 aa11.85□□□□□ -0.51
CD44-210ENST00000434472 CCNL1Q9UK58 526 aaPredicted RBP11.85□□□□□ -0.51
CD44-210ENST00000434472 hCG_1642624A0A1W2PR95 340 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 NPHP1O15259 732 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 GTPBP6O43824 516 aaPredicted RBP11.84□□□□□ -0.51
CD44-210ENST00000434472 CYP2D6P10635 497 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 TXLNAP40222 546 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 TFAP4Q01664 338 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 GRM4Q14833 912 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 NR1I3Q14994 352 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 BLIDQ8IZY5 108 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 CCDC148Q8NFR7 591 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 EPSTI1Q96J88 318 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 BAG1Q99933 345 aaPredicted RBP11.84□□□□□ -0.51
CD44-210ENST00000434472 LZTS2Q9BRK4 669 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 INTS13Q9NVM9 706 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 RMND1Q9NWS8 449 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 OGFRQ9NZT2 677 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 ZNF215Q9UL58 517 aaPredicted RBP11.84□□□□□ -0.51
CD44-210ENST00000434472 SYNRGQ9UMZ2 1314 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 NHSQ6T4R5 1651 aa11.84□□□□□ -0.51
CD44-210ENST00000434472 TAF1P21675 1872 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 A0A087X0B3 334 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 VWA3AA6NCI4 1184 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 AFMP43652 599 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 SPAG1Q07617 926 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 SEMA3FQ13275 785 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 CUL4BQ13620 913 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 ZNF827Q17R98 1081 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 RCSD1Q6JBY9 416 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 PIK3AP1Q6ZUJ8 805 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 REXO1L1PQ8IX06 675 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 ZNF444Q8N0Y2 327 aaPredicted RBP11.83□□□□□ -0.52
CD44-210ENST00000434472 DAGLBQ8NCG7 672 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
CD44-210ENST00000434472 PANX2Q96RD6 677 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 NAA15Q9BXJ9 866 aaKnown RBP11.83□□□□□ -0.52
CD44-210ENST00000434472 MKNK2Q9HBH9 465 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 MKRN1Q9UHC7 482 aaKnown RBP11.83□□□□□ -0.52
CD44-210ENST00000434472 PCDHA4Q9UN74 947 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 XDHP47989 1333 aa11.83□□□□□ -0.52
CD44-210ENST00000434472 AKR1B15C9JRZ8 316 aaPredicted RBP11.82□□□□□ -0.52
CD44-210ENST00000434472 NMT2O60551 498 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 RFC4P35249 363 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 KCNQ4P56696 695 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 CCDC93Q567U6 631 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 TRAPPC3LQ5T215 181 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 CDKAL1Q5VV42 579 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 PPFIBP1Q86W92 1011 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 TMEM139Q8IV31 216 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 TRMT44Q8IYL2 757 aaKnown RBP11.82□□□□□ -0.52
CD44-210ENST00000434472 TC2NQ8N9U0 490 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 PNMA1Q8ND90 353 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 SAMSN1Q9NSI8 373 aaKnown RBP11.82□□□□□ -0.52
CD44-210ENST00000434472 ANKIB1Q9P2G1 1089 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 PPP2R2CQ9Y2T4 447 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.82□□□□□ -0.52
CD44-210ENST00000434472 BTAF1O14981 1849 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 TPM1P09493 284 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 USP17L8P0C7I0 530 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 ATP2B4P23634 1241 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 E2F4Q16254 413 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 ANKRD20A12PQ8NF67 263 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 CCDC51Q96ER9 411 aa11.82□□□□□ -0.52
CD44-210ENST00000434472 CCDC194A0A1B0GVG4 234 aa11.81□□□□□ -0.52
CD44-210ENST00000434472 PPP1R3GB7ZBB8 358 aa11.81□□□□□ -0.52
CD44-210ENST00000434472 LAD1O00515 517 aa11.81□□□□□ -0.52
CD44-210ENST00000434472 MYL1P05976 194 aa11.81□□□□□ -0.52
CD44-210ENST00000434472 TSPY3P0CV98 308 aa11.81□□□□□ -0.52
CD44-210ENST00000434472 TSPY8P0CW00 308 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms