RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 HOXC10Q9NYD6 342 aa34.41■■■■□ 3.1
HMGB1-205ENST00000399494 IFIT2P09913 472 aaKnown RBP34.4■■■■□ 3.1
HMGB1-205ENST00000399494 ATP2B2Q01814 1243 aa34.4■■■■□ 3.1
HMGB1-205ENST00000399494 IGHA2P01877 340 aa34.39■■■■□ 3.1
HMGB1-205ENST00000399494 CYP2D6P10635 497 aa34.39■■■■□ 3.1
HMGB1-205ENST00000399494 BCL11AQ9H165 835 aa34.39■■■■□ 3.1
HMGB1-205ENST00000399494 NAV1Q8NEY1 1877 aa34.39■■■■□ 3.1
HMGB1-205ENST00000399494 LRIT3Q3SXY7 679 aa34.38■■■■□ 3.09
HMGB1-205ENST00000399494 GPR153Q6NV75 609 aa34.38■■■■□ 3.09
HMGB1-205ENST00000399494 KIAA1755Q5JYT7 1200 aa34.37■■■■□ 3.09
HMGB1-205ENST00000399494 TDHQ8IZJ6 230 aa34.37■■■■□ 3.09
HMGB1-205ENST00000399494 SLC44A5Q8NCS7 719 aa34.37■■■■□ 3.09
HMGB1-205ENST00000399494 MOV10L1Q9BXT6 1211 aaKnown RBP34.37■■■■□ 3.09
HMGB1-205ENST00000399494 ARMT1Q9H993 441 aa34.37■■■■□ 3.09
HMGB1-205ENST00000399494 DDX20Q9UHI6 824 aaKnown RBP34.37■■■■□ 3.09
HMGB1-205ENST00000399494 CYP2C19P33261 490 aa34.36■■■■□ 3.09
HMGB1-205ENST00000399494 TMEM179Q6ZVK1 233 aa34.36■■■■□ 3.09
HMGB1-205ENST00000399494 SIAH1Q8IUQ4 282 aa34.36■■■■□ 3.09
HMGB1-205ENST00000399494 DYNLL2Q96FJ2 89 aa34.36■■■■□ 3.09
HMGB1-205ENST00000399494 UBE2OQ9C0C9 1292 aaKnown RBP34.36■■■■□ 3.09
HMGB1-205ENST00000399494 SWAP70Q9UH65 585 aa34.36■■■■□ 3.09
HMGB1-205ENST00000399494 PRKAB2O43741 272 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 STRNO43815 780 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 CNGA1P29973 690 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 SLFNL1Q499Z3 407 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 TRPV1Q8NER1 839 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 PAG1Q9NWQ8 432 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 PCDHB15Q9Y5E8 787 aa34.35■■■■□ 3.09
HMGB1-205ENST00000399494 MSCO60682 206 aa34.34■■■■□ 3.09
HMGB1-205ENST00000399494 LPAR1Q92633 364 aa34.34■■■■□ 3.09
HMGB1-205ENST00000399494 TANGO6Q9C0B7 1094 aa34.34■■■■□ 3.09
HMGB1-205ENST00000399494 SENP6Q9GZR1 1112 aaPredicted RBP34.34■■■■□ 3.09
HMGB1-205ENST00000399494 SPATC1LQ9H0A9 340 aa34.34■■■■□ 3.09
HMGB1-205ENST00000399494 ADD2P35612 726 aa34.33■■■■□ 3.09
HMGB1-205ENST00000399494 DPP9Q86TI2 863 aa34.33■■■■□ 3.09
HMGB1-205ENST00000399494 SHCBP1Q8NEM2 672 aa34.33■■■■□ 3.09
HMGB1-205ENST00000399494 BOLA2Q9H3K6 86 aa34.33■■■■□ 3.09
HMGB1-205ENST00000399494 ATP8A2Q9NTI2 1148 aa34.33■■■■□ 3.09
HMGB1-205ENST00000399494 ATP5JP18859 108 aa34.32■■■■□ 3.08
HMGB1-205ENST00000399494 ADORA2AP29274 412 aa34.32■■■■□ 3.08
HMGB1-205ENST00000399494 DSG3P32926 999 aa34.32■■■■□ 3.08
HMGB1-205ENST00000399494 SLC17A8Q8NDX2 589 aa34.32■■■■□ 3.08
HMGB1-205ENST00000399494 RLFQ13129 1914 aa34.32■■■■□ 3.08
HMGB1-205ENST00000399494 CYBAP13498 195 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 ERCC3P19447 782 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 OLFML2BQ68BL8 750 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 LRRCC1Q9C099 1032 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 TMX2Q9Y320 296 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 FRMPD3Q5JV73 1810 aa34.31■■■■□ 3.08
HMGB1-205ENST00000399494 MBD4O95243 580 aa34.3■■■■□ 3.08
HMGB1-205ENST00000399494 AKR1B1P15121 316 aa34.3■■■■□ 3.08
HMGB1-205ENST00000399494 MB21D1Q8N884 522 aa34.3■■■■□ 3.08
HMGB1-205ENST00000399494 COL6A3P12111 3177 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 DNAH12Q6ZR08 3092 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 SMIM22K7EJ46 135 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 COBLO75128 1261 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 AAMPQ13685 434 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 C12orf60Q5U649 245 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 CLEC10AQ8IUN9 316 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 DEFB123Q8N688 67 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 HAUS7Q99871 368 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 DCTPP1Q9H773 170 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 ARHGEF10LQ9HCE6 1279 aa34.29■■■■□ 3.08
HMGB1-205ENST00000399494 CDK8P49336 464 aa34.28■■■■□ 3.08
HMGB1-205ENST00000399494 MDM2Q00987 491 aaPredicted RBP34.28■■■■□ 3.08
HMGB1-205ENST00000399494 CCDC17Q96LX7 622 aa34.28■■■■□ 3.08
HMGB1-205ENST00000399494 CYP2D7A0A087X1C5 515 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 DNM1LO00429 736 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 CHGBP05060 677 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 Q7L0L9 218 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 SPICE1Q8N0Z3 855 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.27■■■■□ 3.08
HMGB1-205ENST00000399494 MROH8Q9H579 483 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 VCPKMTQ9H867 229 aa34.27■■■■□ 3.08
HMGB1-205ENST00000399494 USP17L12C9JPN9 530 aa34.26■■■■□ 3.08
HMGB1-205ENST00000399494 USP17L21D6R901 530 aa34.26■■■■□ 3.08
HMGB1-205ENST00000399494 FLOT1O75955 427 aa34.26■■■■□ 3.08
HMGB1-205ENST00000399494 ICA1Q05084 483 aa34.26■■■■□ 3.08
HMGB1-205ENST00000399494 ATG4CQ96DT6 458 aa34.26■■■■□ 3.08
HMGB1-205ENST00000399494 ZNF236Q9UL36 1845 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 A0A0G2JMZ2 1700 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 ATN1P54259 1190 aaPredicted RBP34.25■■■■□ 3.07
HMGB1-205ENST00000399494 PLS1Q14651 629 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 UBE3CQ15386 1083 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 EXOC6Q8TAG9 804 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 SH2D4AQ9H788 454 aa34.25■■■■□ 3.07
HMGB1-205ENST00000399494 GJC2Q5T442 439 aaPredicted RBP34.24■■■■□ 3.07
HMGB1-205ENST00000399494 C16orf86Q6ZW13 317 aa34.24■■■■□ 3.07
HMGB1-205ENST00000399494 NCAPG2Q86XI2 1143 aa34.24■■■■□ 3.07
HMGB1-205ENST00000399494 ABRAQ8N0Z2 381 aa34.24■■■■□ 3.07
HMGB1-205ENST00000399494 ARRDC4Q8NCT1 418 aa34.24■■■■□ 3.07
HMGB1-205ENST00000399494 SMARCA5O60264 1052 aaPredicted RBP34.23■■■■□ 3.07
HMGB1-205ENST00000399494 SLC5A4Q9NY91 659 aa34.23■■■■□ 3.07
HMGB1-205ENST00000399494 WDR46O15213 610 aaKnown RBP34.22■■■■□ 3.07
HMGB1-205ENST00000399494 PRAMEF19Q5SWL8 479 aa34.22■■■■□ 3.07
HMGB1-205ENST00000399494 MTMR10Q9NXD2 777 aa34.22■■■■□ 3.07
HMGB1-205ENST00000399494 ADAMTS5Q9UNA0 930 aa34.22■■■■□ 3.07
HMGB1-205ENST00000399494 BAZ2AQ9UIF9 1905 aaKnown RBP34.22■■■■□ 3.07
HMGB1-205ENST00000399494 SEPT4O43236 478 aa34.21■■■■□ 3.07
HMGB1-205ENST00000399494 EEF2P13639 858 aaKnown RBP34.21■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms