RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ACRBPQ8NEB7 543 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 BLZF1Q9H2G9 400 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 SLAIN2Q9P270 581 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 CTNND2Q9UQB3 1225 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 ITGB4P16144 1822 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 MAGEB6P1A0A0J9YX57 407 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 WTIPA6NIX2 430 aaPredicted RBP14.4□□□□□ -0.1
SHMT1-205ENST00000395684 ZBTB22O15209 634 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 CDC25AP30304 524 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 CHRNDQ07001 517 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 FILIP1LQ4L180 1135 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 MTRQ99707 1265 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 RIOK1Q9BRS2 568 aaKnown RBP14.4□□□□□ -0.1
SHMT1-205ENST00000395684 MAP2K7O14733 419 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 FECHP22830 423 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 GYS2P54840 703 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 ERVK-24P63145 666 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 KRT31Q15323 416 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 E2F4Q16254 413 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 TTC38Q5R3I4 469 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 IFIT1BQ5T764 474 aaKnown RBP14.4□□□□□ -0.1
SHMT1-205ENST00000395684 JAKMIP3Q5VZ66 844 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 CATIPQ7Z7H3 387 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 CNGA4Q8IV77 575 aa14.4□□□□□ -0.1
SHMT1-205ENST00000395684 CDC5LQ99459 802 aaKnown RBP14.4□□□□□ -0.1
SHMT1-205ENST00000395684 LRRC10BA6NIK2 292 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 IGHMBP2P38935 993 aaKnown RBP14.39□□□□□ -0.11
SHMT1-205ENST00000395684 ATP2C1P98194 919 aaPredicted RBP14.39□□□□□ -0.11
SHMT1-205ENST00000395684 BRD3Q15059 726 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 SLC35F6Q8N357 371 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 PNKPQ96T60 521 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 STRCQ7RTU9 1775 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 H3BQF6 201 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 EIF5P55010 431 aaKnown RBP14.39□□□□□ -0.11
SHMT1-205ENST00000395684 DYNLL1P63167 89 aaKnown RBP14.39□□□□□ -0.11
SHMT1-205ENST00000395684 IL17AQ16552 155 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 BTG4Q9NY30 223 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 KAT6BQ8WYB5 2073 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 ITIH6Q6UXX5 1313 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 BCL9LQ86UU0 1499 aa14.39□□□□□ -0.11
SHMT1-205ENST00000395684 ADAMTS3O15072 1205 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 BMP15O95972 392 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 KIF4BQ2VIQ3 1234 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 CCDC152Q4G0S7 254 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 BEND6Q5SZJ8 279 aaPredicted RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 RRAGBQ5VZM2 374 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 CEP112Q8N8E3 955 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 VPS16Q9H269 839 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 ABHD10Q9NUJ1 306 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 LIMA1Q9UHB6 759 aaKnown RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 CTAGE9A4FU28 777 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 N4BP3O15049 544 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 VEGFAP15692 232 aaPredicted RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 GYG1P46976 350 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 EVX2Q03828 476 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 PDXDC2PQ6P474 469 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 TMTC3Q6ZXV5 915 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 HNRNPLLQ8WVV9 542 aaKnown RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 CCDC51Q96ER9 411 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 RBM28Q9NW13 759 aaKnown RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 RAB21Q9UL25 225 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 NHSL1Q5SYE7 1610 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 MYH6P13533 1939 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 ARHGAP25P42331 645 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 TMTC1Q8IUR5 882 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 SRBD1Q8N5C6 995 aaKnown RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 IQUBQ8NA54 791 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 MSANTD4Q8NCY6 345 aa14.38□□□□□ -0.11
SHMT1-205ENST00000395684 TTF2Q9UNY4 1162 aaKnown RBP14.38□□□□□ -0.11
SHMT1-205ENST00000395684 PLCH1Q4KWH8 1693 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 INTS5Q6P9B9 1019 aaKnown RBP14.37□□□□□ -0.11
SHMT1-205ENST00000395684 ZNF384Q8TF68 577 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 ZBTB9Q96C00 473 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 BRMS1Q9HCU9 246 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 TAB2Q9NYJ8 693 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 RWDD2AQ9UIY3 292 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 XIRP1Q702N8 1843 aaKnown RBP14.37□□□□□ -0.11
SHMT1-205ENST00000395684 ABCA3Q99758 1704 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 NMT2O60551 498 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 FGRP09769 529 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 USP5P45974 858 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 COPB1P53618 953 aaKnown RBP14.37□□□□□ -0.11
SHMT1-205ENST00000395684 PIK3AP1Q6ZUJ8 805 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 IQCA1Q86XH1 822 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 SUGCTQ9HAC7 445 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 ADAM21Q9UKJ8 722 aa14.37□□□□□ -0.11
SHMT1-205ENST00000395684 ZNF804BA4D1E1 1349 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 CNTNAP5Q8WYK1 1306 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 DISP2A7MBM2 1401 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 IRX5P78411 483 aaPredicted RBP14.36□□□□□ -0.11
SHMT1-205ENST00000395684 MCM6Q14566 821 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 TCP11X2Q5H9J9 407 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 CTR9Q6PD62 1173 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 TXLNBQ8N3L3 684 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 NUP88Q99567 741 aaPredicted RBP14.36□□□□□ -0.11
SHMT1-205ENST00000395684 MAPK8IP1Q9UQF2 711 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 MYH2Q9UKX2 1941 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 COL1A1P02452 1464 aaPredicted RBP14.36□□□□□ -0.11
SHMT1-205ENST00000395684 COL4A1P02462 1669 aa14.36□□□□□ -0.11
SHMT1-205ENST00000395684 MCM7P33993 719 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms