RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MYH15Q9Y2K3 1946 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 CSB-PGBD3P0DP91 1061 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 PTPREP23469 700 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 CCDC57Q2TAC2 916 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 CYP26C1Q6V0L0 522 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 PAGE5Q96GU1 130 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 CD248Q9HCU0 757 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.18■□□□□ 0.18
SDC1-201ENST00000254351 ZSWIM5Q9P217 1185 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 SOS2Q07890 1332 aaPredicted RBP16.18■□□□□ 0.18
SDC1-201ENST00000254351 SPATA31A3Q5VYP0 1347 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 SNAP23O00161 211 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 NDUFAB1O14561 156 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 ATP2C2O75185 946 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 RPS6KA5O75582 802 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 NDUFA10O95299 355 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 GCP02774 474 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 SARSP49591 514 aaKnown RBP16.17■□□□□ 0.18
SDC1-201ENST00000254351 KCNV1Q6PIU1 500 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 CCDC91Q7Z6B0 441 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 ANKRD18AQ8IVF6 992 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 RAPGEF4Q8WZA2 1011 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 APPBP2Q92624 585 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 SHTN1A0MZ66 631 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 IDEP14735 1019 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 RNASE9P60153 205 aaKnown RBP16.17■□□□□ 0.18
SDC1-201ENST00000254351 NTRK3Q16288 839 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 TMTC1Q8IUR5 882 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 HELBQ8NG08 1087 aaPredicted RBP16.17■□□□□ 0.18
SDC1-201ENST00000254351 FAM89AQ96GI7 184 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 LACRTQ9GZZ8 138 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 TTC26A0AVF1 554 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 FRMD3A2A2Y4 597 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 KLK7P49862 253 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 EIF5P55010 431 aaKnown RBP16.17■□□□□ 0.18
SDC1-201ENST00000254351 AMPD2Q01433 879 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 TEX2Q8IWB9 1127 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 ANKRD13CQ8N6S4 541 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 ARL8AQ96BM9 186 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 NAA15Q9BXJ9 866 aaKnown RBP16.17■□□□□ 0.18
SDC1-201ENST00000254351 GDAQ9Y2T3 454 aa16.17■□□□□ 0.18
SDC1-201ENST00000254351 RCCD1A6NED2 376 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 SMIM22K7EJ46 135 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 KRT14P02533 472 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 MMP1P03956 469 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 SNRPA1P09661 255 aaKnown RBP16.16■□□□□ 0.18
SDC1-201ENST00000254351 SLC52A2Q9HAB3 445 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 DMGDHQ9UI17 866 aaKnown RBP16.16■□□□□ 0.18
SDC1-201ENST00000254351 NHSL1Q5SYE7 1610 aa16.16■□□□□ 0.18
SDC1-201ENST00000254351 APBA1Q02410 837 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 TRIM22Q8IYM9 498 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 RASSF8Q8NHQ8 419 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 LY9Q9HBG7 655 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 LTN1O94822 1766 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 MED1Q15648 1581 aaPredicted RBP16.15■□□□□ 0.18
SDC1-201ENST00000254351 PHRF1Q9P1Y6 1649 aaKnown RBP16.15■□□□□ 0.18
SDC1-201ENST00000254351 BAZ2BQ9UIF8 2168 aaKnown RBP16.15■□□□□ 0.18
SDC1-201ENST00000254351 ESYT3A0FGR9 886 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 KRT26Q7Z3Y9 468 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 RUFY1Q96T51 708 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 LRRC1Q9BTT6 524 aa16.15■□□□□ 0.18
SDC1-201ENST00000254351 CWC25Q9NXE8 425 aaPredicted RBP16.15■□□□□ 0.18
SDC1-201ENST00000254351 KCNJ18B7U540 433 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 PPP1R3GB7ZBB8 358 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 BACH1O14867 736 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 PRKAB2O43741 272 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 COPB1P53618 953 aaKnown RBP16.14■□□□□ 0.18
SDC1-201ENST00000254351 CUL4BQ13620 913 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 KCNJ12Q14500 433 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 TSR1Q2NL82 804 aaKnown RBP16.14■□□□□ 0.18
SDC1-201ENST00000254351 KIRREL3Q8IZU9 778 aa16.14■□□□□ 0.18
SDC1-201ENST00000254351 CTCFLQ8NI51 663 aaPredicted RBP16.14■□□□□ 0.18
SDC1-201ENST00000254351 ERCC5P28715 1186 aaPredicted RBP16.14■□□□□ 0.17
SDC1-201ENST00000254351 MCAMP43121 646 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 ACTN3Q08043 901 aaPredicted RBP16.14■□□□□ 0.17
SDC1-201ENST00000254351 IGDCC4Q8TDY8 1250 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 AGPAT5Q9NUQ2 364 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 ZNF532Q9HCE3 1301 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 MYO1BO43795 1136 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 GUCY1A3Q02108 690 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 WDR93Q6P2C0 686 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 TRAPPC11Q7Z392 1133 aa16.14■□□□□ 0.17
SDC1-201ENST00000254351 MYH8P13535 1937 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 PDE6BP35913 854 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 SEC24CP53992 1094 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 CASP7P55210 303 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 RTN1Q16799 776 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 OTUD6BQ8N6M0 293 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 NELFBQ8WX92 580 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 CTAGE1Q96RT6 745 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 PBX1P40424 430 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 HERVK_113P62684 666 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 METTL24Q5JXM2 366 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 CEP57Q86XR8 500 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 BANK1Q8NDB2 785 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 IFT81Q8WYA0 676 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 ARMT1Q9H993 441 aa16.13■□□□□ 0.17
SDC1-201ENST00000254351 KIAA0754O94854 1291 aa16.12■□□□□ 0.17
SDC1-201ENST00000254351 TTF1Q15361 905 aaPredicted RBP16.12■□□□□ 0.17
SDC1-201ENST00000254351 RILPL1Q5EBL4 403 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms