RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RBPJLQ9UBG7 517 aa22.96■■□□□ 1.27
CCDC28A-203ENST00000617445 GJD2Q9UKL4 321 aa22.96■■□□□ 1.27
CCDC28A-203ENST00000617445 INHAP05111 366 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 MYH8P13535 1937 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 ELNP15502 786 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 MAPK4P31152 587 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 RRP1P56182 461 aaKnown RBP22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 LRRFIP1Q32MZ4 808 aaKnown RBP22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 TMEM179Q6ZVK1 233 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 KBTBD3Q8NAB2 608 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 GCC1Q96CN9 775 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 CCDC17Q96LX7 622 aa22.95■■□□□ 1.26
CCDC28A-203ENST00000617445 BAZ2AQ9UIF9 1905 aaKnown RBP22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 MPHOSPH10O00566 681 aaKnown RBP22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 PRKAB2O43741 272 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 GUCY1A2P33402 732 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 SEPT2Q15019 361 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 C12orf60Q5U649 245 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 CATSPERGQ6ZRH7 1159 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 ACER1Q8TDN7 264 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 TXNRD2Q9NNW7 524 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 RABGAP1Q9Y3P9 1069 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 PCDHB15Q9Y5E8 787 aa22.94■■□□□ 1.26
CCDC28A-203ENST00000617445 ZFYP08048 801 aaPredicted RBP22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 ERVK-9P63128 1117 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 ERVK-24P63145 666 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 ZYXQ15942 572 aaKnown RBP22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 SLFNL1Q499Z3 407 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 LBX2Q6XYB7 198 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 CCAR1Q8IX12 1150 aaKnown RBP22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 SOCS4Q8WXH5 440 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 UNC93B1Q9H1C4 597 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 SLC4A4Q9Y6R1 1079 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 CEP290O15078 2479 aa22.93■■□□□ 1.26
CCDC28A-203ENST00000617445 TTC41PQ6P2S7 1318 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 USP17L12C9JPN9 530 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 USP17L21D6R901 530 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 ERC2O15083 957 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 SGPL1O95470 568 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 HMGCRP04035 888 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 CYP2D6P10635 497 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 XRCC5P13010 732 aaKnown RBP22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 VCAM1P19320 739 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 CCNA1P78396 465 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 TRMT44Q8IYL2 757 aaKnown RBP22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 U2AF1L4Q8WU68 220 aaKnown RBP22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 SHISA4Q96DD7 197 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 NUDT12Q9BQG2 462 aa22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 PUS7LQ9H0K6 701 aaKnown RBP22.92■■□□□ 1.26
CCDC28A-203ENST00000617445 GIMAP6Q6P9H5 292 aa22.91■■□□□ 1.26
CCDC28A-203ENST00000617445 SH2D4AQ9H788 454 aa22.91■■□□□ 1.26
CCDC28A-203ENST00000617445 PAK6Q9NQU5 681 aaPredicted RBP22.91■■□□□ 1.26
CCDC28A-203ENST00000617445 GLRX3O76003 335 aaKnown RBP22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 CDK8P49336 464 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 EVX2Q03828 476 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 Q3C1V9 767 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 C16orf86Q6ZW13 317 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 APPBP2Q92624 585 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 DYNLL2Q96FJ2 89 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 STRBPQ96SI9 672 aaKnown RBP22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 PAGR1Q9BTK6 254 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 ARHGEF10LQ9HCE6 1279 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 HOXC10Q9NYD6 342 aa22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 ARPP21Q9UBL0 812 aaPredicted RBP22.9■■□□□ 1.26
CCDC28A-203ENST00000617445 RNF113AO15541 343 aaKnown RBP22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 AAMPQ13685 434 aa22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 UBE2Q1Q7Z7E8 422 aa22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 SLC44A5Q8NCS7 719 aa22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 LPAR1Q92633 364 aa22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 RPAP3Q9H6T3 665 aaPredicted RBP22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 ZBTB47Q9UFB7 747 aaPredicted RBP22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 PLXNB2O15031 1838 aa22.89■■□□□ 1.25
CCDC28A-203ENST00000617445 SLC34A2O95436 690 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 CHGBP05060 677 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 GNAT2P19087 354 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 SBK1Q52WX2 424 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 CTR9Q6PD62 1173 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 PLEKHH3Q7Z736 793 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 HTATIP2Q9BUP3 242 aa22.88■■□□□ 1.25
CCDC28A-203ENST00000617445 RPTORQ8N122 1335 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 A0A1W2PRG0 241 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 TFRCP02786 760 aaKnown RBP22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 COG2Q14746 738 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 POTEEQ6S8J3 1075 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 GPR142Q7Z601 462 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 DEFB118Q96PH6 123 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 PORCNQ9H237 461 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 CWC22Q9HCG8 908 aaKnown RBP22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 HMX1Q9NP08 348 aaPredicted RBP22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 TMX2Q9Y320 296 aa22.87■■□□□ 1.25
CCDC28A-203ENST00000617445 AKR1B1P15121 316 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 CYP2B6P20813 491 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 RGS2P41220 211 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 ICA1Q05084 483 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 MORN1Q5T089 497 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 USP6NLQ92738 828 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 OSBP2Q969R2 916 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 CRISPLD2Q9H0B8 497 aa22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.86■■□□□ 1.25
CCDC28A-203ENST00000617445 KANSL2Q9H9L4 492 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms