RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 C9orf50Q5SZB4 431 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 NAA16Q6N069 864 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-210ENST00000597618 MAPKAPK5Q8IW41 473 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 ARRDC4Q8NCT1 418 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 MYLIPQ8WY64 445 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 C12orf42Q96LP6 360 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 FEZ1Q99689 392 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 SIPA1L1O43166 1804 aa12.46□□□□□ -0.42
TRIM28-210ENST00000597618 LTBP2Q14767 1821 aa12.46□□□□□ -0.42
TRIM28-210ENST00000597618 TMEM265A0A087WTH1 108 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 KBTBD13C9JR72 458 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 MCAMP43121 646 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 USP14P54578 494 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 PPP4CP60510 307 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 TGFBRAP1Q8WUH2 860 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 MEIS3Q99687 375 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
TRIM28-210ENST00000597618 TTYH1Q9H313 450 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-210ENST00000597618 PRDM5Q9NQX1 630 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-210ENST00000597618 PALD1Q9ULE6 856 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 NDUFB9Q9Y6M9 179 aa12.45□□□□□ -0.42
TRIM28-210ENST00000597618 GH2P01242 217 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 CYBAP13498 195 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 CYP2C19P33261 490 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 MTX1Q13505 466 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 GJC2Q5T442 439 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-210ENST00000597618 LBX2Q6XYB7 198 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 SLC39A5Q6ZMH5 540 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 BADQ92934 168 aa12.44□□□□□ -0.42
TRIM28-210ENST00000597618 IGSF3O75054 1194 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 IGHA2P01877 340 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 GNAI3P08754 354 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 VCAM1P19320 739 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 SNX17Q15036 470 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 ZYXQ15942 572 aaKnown RBP12.43□□□□□ -0.42
TRIM28-210ENST00000597618 TRIM60Q495X7 471 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 OLFML2BQ68BL8 750 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 CATSPERGQ6ZRH7 1159 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 TRPV1Q8NER1 839 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 NPLOC4Q8TAT6 608 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 PDLIM7Q9NR12 457 aa12.43□□□□□ -0.42
TRIM28-210ENST00000597618 SAP30BPQ9UHR5 308 aaKnown RBP12.43□□□□□ -0.42
TRIM28-210ENST00000597618 NOB1Q9ULX3 412 aaKnown RBP12.43□□□□□ -0.42
TRIM28-210ENST00000597618 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-210ENST00000597618 TJAP1Q5JTD0 557 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 C1orf53Q5VUE5 145 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 ADGRA1Q86SQ6 560 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 DPP9Q86TI2 863 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 KIAA1683Q9H0B3 1180 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 BTBD7Q9P203 1132 aa12.42□□□□□ -0.42
TRIM28-210ENST00000597618 SPDYE16A6NNV3 312 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-210ENST00000597618 SEPT4O43236 478 aa12.41□□□□□ -0.42
TRIM28-210ENST00000597618 STRNO43815 780 aa12.41□□□□□ -0.42
TRIM28-210ENST00000597618 CT47B1P0C2W7 299 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-210ENST00000597618 SLFN5Q08AF3 891 aa12.41□□□□□ -0.42
TRIM28-210ENST00000597618 RAB3GAP1Q15042 981 aa12.41□□□□□ -0.42
TRIM28-210ENST00000597618 TATDN1Q6P1N9 297 aa12.41□□□□□ -0.42
TRIM28-210ENST00000597618 RNPC3Q96LT9 517 aaKnown RBP12.41□□□□□ -0.42
TRIM28-210ENST00000597618 ZNF236Q9UL36 1845 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 TRIM43BA6NCK2 446 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 TNFRSF10AO00220 468 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 MYCNP04198 464 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-210ENST00000597618 COL9A1P20849 921 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 ADORA2AP29274 412 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 ADCYAP1R1P41586 468 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 G3BP1Q13283 466 aaKnown RBP eCLIP12.4□□□□□ -0.425e-10■■□□□ 12.2
TRIM28-210ENST00000597618 TTC39AQ5SRH9 613 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 CERS3Q8IU89 383 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 TRIM43Q96BQ3 446 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-210ENST00000597618 EHD4Q9H223 541 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 RPAP3Q9H6T3 665 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-210ENST00000597618 SNRKQ9NRH2 765 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 SLC5A4Q9NY91 659 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 SERPINB13Q9UIV8 391 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 TACC3Q9Y6A5 838 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 RLFQ13129 1914 aa12.4□□□□□ -0.42
TRIM28-210ENST00000597618 FOCADQ5VW36 1801 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 LRRC41Q15345 812 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 ABCB5Q2M3G0 1257 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 CERKLQ49MI3 558 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-210ENST00000597618 CCDC158Q5M9N0 1113 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 ANO1Q5XXA6 986 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 SH3RF1Q7Z6J0 888 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 SHCBP1Q8NEM2 672 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 CABP5Q9NP86 173 aa12.39□□□□□ -0.43
TRIM28-210ENST00000597618 CYP2E1P05181 493 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-210ENST00000597618 CLTBP09497 229 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 USP5P45974 858 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 TLE2Q04725 743 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 TTC6Q86TZ1 520 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 ACER1Q8TDN7 264 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 FERMT2Q96AC1 680 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 MOV10L1Q9BXT6 1211 aaKnown RBP12.38□□□□□ -0.43
TRIM28-210ENST00000597618 SPATC1LQ9H0A9 340 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 GPR108Q9NPR9 543 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 HOXC10Q9NYD6 342 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 PHF24Q9UPV7 400 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 BDP1A6H8Y1 2624 aa12.38□□□□□ -0.43
TRIM28-210ENST00000597618 GNAI2P04899 355 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 ERCC3P19447 782 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms