RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 USP17L22D6RA61 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L17D6RBQ6 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L19D6RCP7 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L20D6RJB6 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 PDE6AP16499 860 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 SHMT1P34896 483 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 PLCD1P51178 756 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L24Q0WX57 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 SLC9C2Q5TAH2 1124 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 CCAR1Q8IX12 1150 aaKnown RBP29.03■■■□□ 2.24
LSM4-202ENST00000593564 TRMT44Q8IYL2 757 aaKnown RBP29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP6NLQ92738 828 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 HMMRO75330 724 aa29.02■■■□□ 2.24
LSM4-202ENST00000593564 PRKAR2AP13861 404 aaKnown RBP29.02■■■□□ 2.24
LSM4-202ENST00000593564 ZYXQ15942 572 aaKnown RBP29.02■■■□□ 2.24
LSM4-202ENST00000593564 GPR142Q7Z601 462 aa29.02■■■□□ 2.24
LSM4-202ENST00000593564 CABP5Q9NP86 173 aa29.02■■■□□ 2.24
LSM4-202ENST00000593564 DDX19BQ9UMR2 479 aa29.02■■■□□ 2.24
LSM4-202ENST00000593564 RABGAP1Q9Y3P9 1069 aa29.02■■■□□ 2.24
LSM4-202ENST00000593564 DDX60LQ5H9U9 1706 aaKnown RBP29.02■■■□□ 2.24
LSM4-202ENST00000593564 SZT2Q5T011 3432 aa29.01■■■□□ 2.24
LSM4-202ENST00000593564 POLR3DP05423 398 aaPredicted RBP29.01■■■□□ 2.23
LSM4-202ENST00000593564 PLEKHH3Q7Z736 793 aa29.01■■■□□ 2.23
LSM4-202ENST00000593564 ACER1Q8TDN7 264 aa29.01■■■□□ 2.23
LSM4-202ENST00000593564 CRNKL1Q9BZJ0 848 aaKnown RBP29.01■■■□□ 2.23
LSM4-202ENST00000593564 ZBTB40Q9NUA8 1239 aa29.01■■■□□ 2.23
LSM4-202ENST00000593564 IFIT2P09913 472 aaKnown RBP29■■■□□ 2.23
LSM4-202ENST00000593564 ZKSCAN1P17029 563 aaPredicted RBP29■■■□□ 2.23
LSM4-202ENST00000593564 GABPAQ06546 454 aa29■■■□□ 2.23
LSM4-202ENST00000593564 MORN1Q5T089 497 aa29■■■□□ 2.23
LSM4-202ENST00000593564 CATSPERGQ6ZRH7 1159 aa29■■■□□ 2.23
LSM4-202ENST00000593564 SIRT2Q8IXJ6 389 aa29■■■□□ 2.23
LSM4-202ENST00000593564 OGDHLQ9ULD0 1010 aa29■■■□□ 2.23
LSM4-202ENST00000593564 ZNF532Q9HCE3 1301 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 APBB1O00213 710 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 GOLIM4O00461 696 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 CNMDO75829 334 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 VCAM1P19320 739 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 RGS2P41220 211 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 MNX1P50219 401 aaPredicted RBP28.99■■■□□ 2.23
LSM4-202ENST00000593564 DNAJC2Q99543 621 aaKnown RBP28.99■■■□□ 2.23
LSM4-202ENST00000593564 NBPF3Q9H094 633 aa28.99■■■□□ 2.23
LSM4-202ENST00000593564 TCRBV5S4A2TA0A5A2 114 aa28.98■■■□□ 2.23
LSM4-202ENST00000593564 GUCY1A2P33402 732 aa28.98■■■□□ 2.23
LSM4-202ENST00000593564 CCNA1P78396 465 aa28.98■■■□□ 2.23
LSM4-202ENST00000593564 APBA2Q99767 749 aa28.98■■■□□ 2.23
LSM4-202ENST00000593564 COG6Q9Y2V7 657 aa28.98■■■□□ 2.23
LSM4-202ENST00000593564 A0A1W2PPC1 479 aa28.97■■■□□ 2.23
LSM4-202ENST00000593564 RAB11FIP3O75154 756 aa28.97■■■□□ 2.23
LSM4-202ENST00000593564 LBX2Q6XYB7 198 aa28.97■■■□□ 2.23
LSM4-202ENST00000593564 MCM9Q9NXL9 1143 aa28.97■■■□□ 2.23
LSM4-202ENST00000593564 NAV1Q8NEY1 1877 aa28.97■■■□□ 2.23
LSM4-202ENST00000593564 CACNB2Q08289 660 aaPredicted RBP28.96■■■□□ 2.23
LSM4-202ENST00000593564 CWC22Q9HCG8 908 aaKnown RBP28.96■■■□□ 2.23
LSM4-202ENST00000593564 DCP1AQ9NPI6 582 aaPredicted RBP28.96■■■□□ 2.23
LSM4-202ENST00000593564 ALPK3Q96L96 1907 aa28.95■■■□□ 2.23
LSM4-202ENST00000593564 GLRX3O76003 335 aaKnown RBP28.95■■■□□ 2.22
LSM4-202ENST00000593564 SEPT2Q15019 361 aa28.95■■■□□ 2.22
LSM4-202ENST00000593564 CCL14Q16627 93 aa28.95■■■□□ 2.22
LSM4-202ENST00000593564 LCORLQ8N3X6 602 aa28.95■■■□□ 2.22
LSM4-202ENST00000593564 C11orf49Q9H6J7 331 aa28.95■■■□□ 2.22
LSM4-202ENST00000593564 MAP2K5Q13163 448 aa28.94■■■□□ 2.22
LSM4-202ENST00000593564 SDR42E1Q8WUS8 393 aa28.94■■■□□ 2.22
LSM4-202ENST00000593564 EDC3Q96F86 508 aaKnown RBP28.94■■■□□ 2.22
LSM4-202ENST00000593564 CHMP4BQ9H444 224 aaKnown RBP28.94■■■□□ 2.22
LSM4-202ENST00000593564 RPAP3Q9H6T3 665 aaPredicted RBP28.94■■■□□ 2.22
LSM4-202ENST00000593564 EVX2Q03828 476 aa28.93■■■□□ 2.22
LSM4-202ENST00000593564 C7orf61Q8IZ16 206 aa28.93■■■□□ 2.22
LSM4-202ENST00000593564 PAG1Q9NWQ8 432 aa28.93■■■□□ 2.22
LSM4-202ENST00000593564 BTBD7Q9P203 1132 aa28.93■■■□□ 2.22
LSM4-202ENST00000593564 SLC15A5A6NIM6 579 aa28.92■■■□□ 2.22
LSM4-202ENST00000593564 SPDYE16A6NNV3 312 aaPredicted RBP28.92■■■□□ 2.22
LSM4-202ENST00000593564 STAP2Q9UGK3 403 aa28.92■■■□□ 2.22
LSM4-202ENST00000593564 MPHOSPH10O00566 681 aaKnown RBP28.91■■■□□ 2.22
LSM4-202ENST00000593564 ATP5JP18859 108 aa28.91■■■□□ 2.22
LSM4-202ENST00000593564 BCL11AQ9H165 835 aa28.91■■■□□ 2.22
LSM4-202ENST00000593564 LAMA3Q16787 3333 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 A0A1W2PRG0 241 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 CYP2D6P10635 497 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 PTPREP23469 700 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 CCND3P30281 292 aaPredicted RBP28.9■■■□□ 2.22
LSM4-202ENST00000593564 ADD2P35612 726 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 WDR78Q5VTH9 848 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 LHX8Q68G74 356 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 TMEM179Q6ZVK1 233 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 BOLA2Q9H3K6 86 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 ARMT1Q9H993 441 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 SWAP70Q9UH65 585 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 PFASO15067 1338 aa28.9■■■□□ 2.22
LSM4-202ENST00000593564 GRB14Q14449 540 aa28.89■■■□□ 2.22
LSM4-202ENST00000593564 SLC44A5Q8NCS7 719 aa28.89■■■□□ 2.22
LSM4-202ENST00000593564 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.89■■■□□ 2.223e-8■■□□□ 14.5
LSM4-202ENST00000593564 ATP8A2Q9NTI2 1148 aa28.89■■■□□ 2.22
LSM4-202ENST00000593564 IVNS1ABPQ9Y6Y0 642 aa28.89■■■□□ 2.22
LSM4-202ENST00000593564 MBD4O95243 580 aa28.88■■■□□ 2.21
LSM4-202ENST00000593564 HOXC6P09630 235 aa28.88■■■□□ 2.21
LSM4-202ENST00000593564 COL6A1P12109 1028 aa28.88■■■□□ 2.21
LSM4-202ENST00000593564 MFSD14CQ5VZR4 134 aa28.88■■■□□ 2.21
LSM4-202ENST00000593564 HAUS7Q99871 368 aa28.88■■■□□ 2.21
LSM4-202ENST00000593564 GDF15Q99988 308 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms