RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 DNTTIP2Q5QJE6 756 aaKnown RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 MOB2Q70IA6 237 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 CERS5Q8N5B7 392 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 COA7Q96BR5 231 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 CEP95Q96GE4 821 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 GLIS2Q9BZE0 524 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 MRC1P22897 1456 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 LMO7Q8WWI1 1683 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 BRWD3Q6RI45 1802 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 ADM5C9JUS6 153 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 HOXD11P31277 338 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 TXLNAP40222 546 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 SUPT20HL1Q3ZLR7 823 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 RASGRP2Q7LDG7 609 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 NCAPG2Q86XI2 1143 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 DIS3L2Q8IYB7 885 aaKnown RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 FANCBQ8NB91 859 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 TMEM87BQ96K49 555 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 PCMTD1Q96MG8 357 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 SCLT1Q96NL6 688 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 ZNF70Q9UC06 446 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 GINS2Q9Y248 185 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 ASTN2O75129 1339 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 FLT1P17948 1338 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 RREB1Q92766 1687 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 GOLGA6L19H0YKK7 550 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 PLEKHA8P1O95397 391 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 RBM25P49756 843 aaKnown RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 NECTIN1Q15223 517 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 NBPF12Q5TAG4 269 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 SASS6Q6UVJ0 657 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 CDC37L1Q7L3B6 337 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 BEGAINQ9BUH8 593 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 CD2APQ9Y5K6 639 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 TNS1Q9HBL0 1735 aaKnown RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 GOLGA6L3A6NEY3 463 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 DDTLA6NHG4 134 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 MCM4P33991 863 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 AFMP43652 599 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 HMGCS2P54868 508 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 RAD51AP2Q09MP3 1159 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 SCRN1Q12765 414 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 APOA5Q6Q788 366 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 STAMQ92783 540 aa6.26□□□□□ -1.41
VPS13C-209ENST00000560637 ERCC4Q92889 916 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-209ENST00000560637 FAM208AQ9UK61 1670 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 PDIA3P30101 505 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 HOXA10P31260 410 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 INPP5BP32019 993 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 GNAQP50148 359 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 MAEAQ7L5Y9 396 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 VGLL2Q8N8G2 317 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 FSIP1Q8NA03 581 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 IVNS1ABPQ9Y6Y0 642 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 RTL9Q8NET4 1388 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 USP17L5A8MUK1 530 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 BTBD18B2RXH4 712 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 CELF2O95319 508 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 EEF2P13639 858 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 TAL1P17542 331 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 HOXA13P31271 388 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 DEKP35659 375 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 FAM83BQ5T0W9 1011 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 JMYQ8N9B5 988 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 PIGSQ96S52 555 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 FTOQ9C0B1 505 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 DDX4Q9NQI0 724 aaKnown RBP6.25□□□□□ -1.41
VPS13C-209ENST00000560637 RTEL1Q9NZ71 1219 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 CFAP45Q9UL16 551 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 WNK3Q9BYP7 1800 aa6.25□□□□□ -1.41
VPS13C-209ENST00000560637 SYCE3A1L190 88 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 WNT10BO00744 389 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ZSCAN22P10073 491 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 CNGA1P29973 690 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 UBA7P41226 1012 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 KRT40Q6A162 431 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TTBK2Q6IQ55 1244 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 CDAN1Q8IWY9 1227 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 OSBPL5Q9H0X9 879 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TNMDQ9H2S6 317 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 SH2D4AQ9H788 454 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ZSWIM6Q9HCJ5 1215 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 PCDHA1Q9Y5I3 950 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ANKRD26Q9UPS8 1709 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 VWA3AA6NCI4 1184 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 BAG4O95429 457 aaKnown RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TTLL1O95922 423 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 EGFRP00533 1210 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 EPHX2P34913 555 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 HUNKP57058 714 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 NR5A1Q13285 461 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 COL9A3Q14050 684 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 SHROOM1Q2M3G4 852 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-209ENST00000560637 CRY2Q49AN0 593 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 ANKRD35Q8N283 1001 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TRPM4Q8TD43 1214 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 TMEM47Q9BQJ4 181 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 C6orf50Q9HD87 102 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 BRPF3Q9ULD4 1205 aa6.24□□□□□ -1.41
VPS13C-209ENST00000560637 PLEKHG2Q9H7P9 1386 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms