RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TSPY8P0CW00 308 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 CHRNA5P30532 468 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 KIF5BP33176 963 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 CDK8P49336 464 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 PKN1Q16512 942 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 NOSTRINQ8IVI9 506 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 C7orf43Q8WVR3 580 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 SYT17Q9BSW7 474 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 CTAGE5O15320 804 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 FAM160A1Q05DH4 1040 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 DIS3L2Q8IYB7 885 aaKnown RBP30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 FSIP1Q8NA03 581 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 ENGASEQ8NFI3 743 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 MRPS27Q92552 414 aaKnown RBP30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 GOLPH3LQ9H4A5 285 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 CAMK4Q16566 473 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 KCNJ14Q9UNX9 436 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 MYH1P12882 1939 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 MYH6P13533 1939 aa30.42■■■□□ 2.46
CCDC88C-205ENST00000553403 CNTNAP5Q8WYK1 1306 aa30.41■■■□□ 2.46
CCDC88C-205ENST00000553403 PPP6R2O75170 966 aa30.41■■■□□ 2.46
CCDC88C-205ENST00000553403 SLC44A5Q8NCS7 719 aa30.41■■■□□ 2.46
CCDC88C-205ENST00000553403 MRIQ9BWK5 157 aa30.41■■■□□ 2.46
CCDC88C-205ENST00000553403 BTBD18B2RXH4 712 aa30.4■■■□□ 2.46
CCDC88C-205ENST00000553403 F8W031 263 aaPredicted RBP30.4■■■□□ 2.46
CCDC88C-205ENST00000553403 SNW1Q13573 536 aaKnown RBP30.4■■■□□ 2.46
CCDC88C-205ENST00000553403 JMYQ8N9B5 988 aa30.4■■■□□ 2.46
CCDC88C-205ENST00000553403 V9GY48 417 aaPredicted RBP30.4■■■□□ 2.46
CCDC88C-205ENST00000553403 STRIP1Q5VSL9 837 aa30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 SRBD1Q8N5C6 995 aaKnown RBP30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 NEDD1Q8NHV4 660 aa30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 TEKT1Q969V4 418 aa30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 DBNDD1Q9H9R9 158 aa30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 SNED1Q8TER0 1413 aa30.39■■■□□ 2.46
CCDC88C-205ENST00000553403 PTPAQ15257 358 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 PNMA1Q8ND90 353 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 SUPT20HQ8NEM7 779 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 PDLIM2Q96JY6 352 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 MXD3Q9BW11 206 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 TAOK2Q9UL54 1235 aa30.39■■■□□ 2.45
CCDC88C-205ENST00000553403 C10orf71Q711Q0 1435 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 USP17L3A6NCW0 530 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 USP17L4A6NCW7 530 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 GNAQP50148 359 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 USP17L1Q7RTZ2 530 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 PHF20Q9BVI0 1012 aa30.38■■■□□ 2.45
CCDC88C-205ENST00000553403 KINO60870 393 aaKnown RBP30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 TYRO3Q06418 890 aa30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 GRM4Q14833 912 aa30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 GRIPAP1Q4V328 841 aa30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 AXDND1Q5T1B0 1012 aaPredicted RBP30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 USP40Q9NVE5 1235 aa30.37■■■□□ 2.45
CCDC88C-205ENST00000553403 ECE2O60344 883 aa30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 WDHD1O75717 1129 aaPredicted RBP30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 HDLBPQ00341 1268 aaKnown RBP30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 RILPL1Q5EBL4 403 aa30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 FMR1NBQ8N0W7 255 aaPredicted RBP30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 EIF4ENIF1Q9NRA8 985 aaKnown RBP30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 CMA1P23946 247 aa30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 CKAP2LQ8IYA6 745 aa30.36■■■□□ 2.45
CCDC88C-205ENST00000553403 SCNN1DP51172 638 aa30.35■■■□□ 2.45
CCDC88C-205ENST00000553403 DACT2Q5SW24 774 aa30.35■■■□□ 2.45
CCDC88C-205ENST00000553403 VPS54Q9P1Q0 977 aa30.35■■■□□ 2.45
CCDC88C-205ENST00000553403 KRT2P35908 639 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 GABPAQ06546 454 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 KIAA2012Q0VF49 1180 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 APOBEC3HQ6NTF7 200 aaKnown RBP30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 SHISA4Q96DD7 197 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 ZDHHC15Q96MV8 337 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 TMEM47Q9BQJ4 181 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 ZNF219Q9P2Y4 722 aaPredicted RBP30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 MRVI1Q9Y6F6 885 aa30.34■■■□□ 2.45
CCDC88C-205ENST00000553403 CRKP46108 304 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 NOVP48745 357 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 CDC42EP5Q6NZY7 148 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 SASS6Q6UVJ0 657 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 TRIM44Q96DX7 344 aaPredicted RBP30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 BRMS1Q9HCU9 246 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 PLIN4Q96Q06 1357 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 SCG2P13521 617 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 PICALMQ13492 652 aa30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 PFKFB3Q16875 520 aaPredicted RBP30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 DDX4Q9NQI0 724 aaKnown RBP30.33■■■□□ 2.45
CCDC88C-205ENST00000553403 TOB1P50616 345 aaPredicted RBP30.32■■■□□ 2.44
CCDC88C-205ENST00000553403 LZTS2Q9BRK4 669 aa30.32■■■□□ 2.44
CCDC88C-205ENST00000553403 KCNQ5Q9NR82 932 aa30.32■■■□□ 2.44
CCDC88C-205ENST00000553403 SWAP70Q9UH65 585 aa30.32■■■□□ 2.44
CCDC88C-205ENST00000553403 MYO3BQ8WXR4 1341 aa30.32■■■□□ 2.44
CCDC88C-205ENST00000553403 ZNF646O15015 1829 aaPredicted RBP30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 A0A1B0GVL5 298 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 CUTAO60888 179 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 NDUFA8P51970 172 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 NR5A1Q13285 461 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 OXER1Q8TDS5 423 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 OSBPL5Q9H0X9 879 aaPredicted RBP30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 MAD2L2Q9UI95 211 aa30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 MORC2Q9Y6X9 1032 aaPredicted RBP30.31■■■□□ 2.44
CCDC88C-205ENST00000553403 FAM237AA0A1B0GTK4 181 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 hCG_1642624A0A1W2PR95 340 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 MARCKSP29966 332 aaPredicted RBP30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 325.2 ms