RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ARRDC4Q8NCT1 418 aa20.68■□□□□ 0.9
VPS29-204ENST00000548259 CABP5Q9NP86 173 aa20.68■□□□□ 0.9
VPS29-204ENST00000548259 ATAD5Q96QE3 1844 aa20.68■□□□□ 0.9
VPS29-204ENST00000548259 USP5P45974 858 aa20.67■□□□□ 0.9
VPS29-204ENST00000548259 RARSP54136 660 aaKnown RBP20.67■□□□□ 0.9
VPS29-204ENST00000548259 ATN1P54259 1190 aaPredicted RBP20.67■□□□□ 0.9
VPS29-204ENST00000548259 RAB3GAP1Q15042 981 aa20.67■□□□□ 0.9
VPS29-204ENST00000548259 KIAA1683Q9H0B3 1180 aa20.67■□□□□ 0.9
VPS29-204ENST00000548259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.67■□□□□ 0.9
VPS29-204ENST00000548259 KBTBD13C9JR72 458 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 HOXC6P09630 235 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 CATSPERGQ6ZRH7 1159 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 TTC6Q86TZ1 520 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 ZNF512BQ96KM6 892 aaPredicted RBP20.66■□□□□ 0.9
VPS29-204ENST00000548259 FAM161BQ96MY7 647 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 GUCD1Q96NT3 240 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 SLC5A4Q9NY91 659 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 SERPINB13Q9UIV8 391 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 PLXNB2O15031 1838 aa20.66■□□□□ 0.9
VPS29-204ENST00000548259 CYP2E1P05181 493 aaPredicted RBP20.65■□□□□ 0.9
VPS29-204ENST00000548259 CYP7A1P22680 504 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 SHROOM1Q2M3G4 852 aaPredicted RBP20.65■□□□□ 0.9
VPS29-204ENST00000548259 TNNI3KQ59H18 835 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 TMED8Q6PL24 325 aaPredicted RBP20.65■□□□□ 0.9
VPS29-204ENST00000548259 LBX2Q6XYB7 198 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 DPP9Q86TI2 863 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 EHD4Q9H223 541 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 NDUFB9Q9Y6M9 179 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 FPGT-TNNI3KV9GXZ4 949 aa20.65■□□□□ 0.9
VPS29-204ENST00000548259 UNC80Q8N2C7 3258 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 VCAM1P19320 739 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 RTP1P59025 263 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 GRB14Q14449 540 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 ABCB5Q2M3G0 1257 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 CERKLQ49MI3 558 aaPredicted RBP20.64■□□□□ 0.89
VPS29-204ENST00000548259 TATDN1Q6P1N9 297 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 ADGRA1Q86SQ6 560 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 ATP11BQ9Y2G3 1177 aa20.64■□□□□ 0.89
VPS29-204ENST00000548259 PNMA6EA0A0J9YXQ4 647 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 STRNO43815 780 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 CNMDO75829 334 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 CYP2C19P33261 490 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 DBNDD2Q9BQY9 259 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 FLRT1Q9NZU1 646 aa20.63■□□□□ 0.89
VPS29-204ENST00000548259 IDH1O75874 414 aaKnown RBP20.62■□□□□ 0.89
VPS29-204ENST00000548259 ZAP70P43403 619 aa20.62■□□□□ 0.89
VPS29-204ENST00000548259 PRDM5Q9NQX1 630 aaPredicted RBP20.62■□□□□ 0.89
VPS29-204ENST00000548259 HOXC10Q9NYD6 342 aa20.62■□□□□ 0.89
VPS29-204ENST00000548259 DYNLL1P63167 89 aaKnown RBP20.61■□□□□ 0.89
VPS29-204ENST00000548259 OLFML2BQ68BL8 750 aa20.61■□□□□ 0.89
VPS29-204ENST00000548259 POTEEQ6S8J3 1075 aa20.61■□□□□ 0.89
VPS29-204ENST00000548259 RPAP3Q9H6T3 665 aaPredicted RBP20.61■□□□□ 0.89
VPS29-204ENST00000548259 MYCNP04198 464 aaPredicted RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 CYBAP13498 195 aa20.6■□□□□ 0.89
VPS29-204ENST00000548259 MAP3K12Q12852 859 aa20.6■□□□□ 0.89
VPS29-204ENST00000548259 GJC2Q5T442 439 aaPredicted RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 SLC39A5Q6ZMH5 540 aa20.6■□□□□ 0.89
VPS29-204ENST00000548259 MIGA1Q8NAN2 632 aa20.6■□□□□ 0.89
VPS29-204ENST00000548259 MAFAQ8NHW3 353 aaPredicted RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 FRAT1Q92837 279 aaPredicted RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 CDX2Q99626 313 aaPredicted RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 PIH1D3Q9NQM4 214 aaKnown RBP20.6■□□□□ 0.89
VPS29-204ENST00000548259 BTBD7Q9P203 1132 aa20.6■□□□□ 0.89
VPS29-204ENST00000548259 SPDYE16A6NNV3 312 aaPredicted RBP20.59■□□□□ 0.89
VPS29-204ENST00000548259 SEPT4O43236 478 aa20.59■□□□□ 0.89
VPS29-204ENST00000548259 SURF6O75683 361 aaKnown RBP20.59■□□□□ 0.89
VPS29-204ENST00000548259 TRIM27P14373 513 aa20.59■□□□□ 0.89
VPS29-204ENST00000548259 SMAD3P84022 425 aaKnown RBP20.59■□□□□ 0.89
VPS29-204ENST00000548259 COG2Q14746 738 aa20.59■□□□□ 0.89
VPS29-204ENST00000548259 NPLOC4Q8TAT6 608 aa20.59■□□□□ 0.89
VPS29-204ENST00000548259 MAST2Q6P0Q8 1798 aa20.59■□□□□ 0.89
VPS29-204ENST00000548259 ADORA2AP29274 412 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 SHHQ15465 462 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 MAGEB6Q8N7X4 407 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 MB21D1Q8N884 522 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 SHCBP1Q8NEM2 672 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 ACER1Q8TDN7 264 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 SYMPKQ92797 1274 aaKnown RBP20.58■□□□□ 0.89
VPS29-204ENST00000548259 SEMA6BQ9H3T3 888 aa20.58■□□□□ 0.89
VPS29-204ENST00000548259 POLR3DP05423 398 aaPredicted RBP20.57■□□□□ 0.88
VPS29-204ENST00000548259 TANGO6Q9C0B7 1094 aa20.57■□□□□ 0.88
VPS29-204ENST00000548259 MROH8Q9H579 483 aa20.57■□□□□ 0.88
VPS29-204ENST00000548259 SIPA1L1O43166 1804 aa20.57■□□□□ 0.88
VPS29-204ENST00000548259 DNAH12Q6ZR08 3092 aa20.57■□□□□ 0.88
VPS29-204ENST00000548259 MPHOSPH10O00566 681 aaKnown RBP20.56■□□□□ 0.88
VPS29-204ENST00000548259 POLA2Q14181 598 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 ABRAQ8N0Z2 381 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 TRPV1Q8NER1 839 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 SSH3Q8TE77 659 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 BADQ92934 168 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 MOV10L1Q9BXT6 1211 aaKnown RBP20.56■□□□□ 0.88
VPS29-204ENST00000548259 SPATC1LQ9H0A9 340 aa20.56■□□□□ 0.88
VPS29-204ENST00000548259 LAMA2P24043 3122 aaKnown RBP20.56■□□□□ 0.88
VPS29-204ENST00000548259 TMEM265A0A087WTH1 108 aa20.55■□□□□ 0.88
VPS29-204ENST00000548259 ATP8B2P98198 1209 aa20.55■□□□□ 0.88
VPS29-204ENST00000548259 TRIM60Q495X7 471 aa20.55■□□□□ 0.88
VPS29-204ENST00000548259 CLUAP1Q96AJ1 413 aa20.55■□□□□ 0.88
VPS29-204ENST00000548259 FOSL2P15408 326 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 ERCC3P19447 782 aa20.54■□□□□ 0.88
VPS29-204ENST00000548259 ADCYAP1R1P41586 468 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms