RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	NT5C1A	Q9BXI3	368 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	ASCC2	Q9H1I8	757 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-238	ENST00000534296	GMIP	Q9P107	970 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	CEP131	Q9UPN4	1083 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	PCDHB14	Q9Y5E9	798 aa		4.67	□□□□□ -1.66
CD44-238	ENST00000534296	GREM1	O60565	184 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	ADAMTS4	O75173	837 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	FUT4	P22083	530 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	GART	P22102	1010 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	RAD51AP2	Q09MP3	1159 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	BNIP3	Q12983	259 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	NKPD1	Q17RQ9	610 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	SEZ6	Q53EL9	994 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	CDKAL1	Q5VV42	579 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	ZNF574	Q6ZN55	896 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-238	ENST00000534296	FAM214B	Q7L5A3	538 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	ZNF654	Q8IZM8	581 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	FBXO27	Q8NI29	283 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	ASPN	Q9BXN1	380 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	BRMS1	Q9HCU9	246 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	GPATCH2	Q9NW75	528 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	ADAMTS1	Q9UHI8	967 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	PLAGL2	Q9UPG8	496 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296	CAPN6	Q9Y6Q1	641 aa		4.66	□□□□□ -1.66
CD44-238	ENST00000534296		H3BS24	57 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	ATE1	O95260	518 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	RECK	O95980	971 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	CD8B	P10966	210 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	ZP2	Q05996	745 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	SLC23A3	Q6PIS1	610 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	GK5	Q6ZS86	529 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	RNF141	Q8WVD5	230 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	HSPA12B	Q96MM6	686 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	FERD3L	Q96RJ6	166 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	4.65	□□□□□ -1.67
CD44-238	ENST00000534296	RC3H2	Q9HBD1	1191 aa	Known RBP	4.65	□□□□□ -1.67
CD44-238	ENST00000534296	UBP1	Q9NZI7	540 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	LMCD1	Q9NZU5	365 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-238	ENST00000534296	PITPNM2	Q9BZ72	1349 aa		4.65	□□□□□ -1.67
CD44-238	ENST00000534296	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-238	ENST00000534296	JUNB	P17275	347 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-238	ENST00000534296	CCNF	P41002	786 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	COL9A2	Q14055	689 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-238	ENST00000534296	CLEC16A	Q2KHT3	1053 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	ZNF792	Q3KQV3	632 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	TMPRSS7	Q7RTY8	843 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	SPRED2	Q7Z698	418 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	DNAJB8	Q8NHS0	232 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	RIN3	Q8TB24	985 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	ASIC4	Q96FT7	647 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	EHMT1	Q9H9B1	1298 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	ADGRE2	Q9UHX3	823 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296		U3KQE9	123 aa		4.64	□□□□□ -1.67
CD44-238	ENST00000534296	PRR33	A8MZF0	331 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	UPK3BL1	B0FP48	263 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	CHURC1-FNTB	B4DL54	471 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	UPK3BL2	E5RIL1	263 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	RGS13	O14921	159 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	TAL1	P17542	331 aa	Predicted RBP	4.63	□□□□□ -1.67
CD44-238	ENST00000534296	CRK	P46108	304 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	TNK2	Q07912	1038 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	ZNF394	Q53GI3	561 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	ARSH	Q5FYA8	562 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	OVOS1	Q6IE37	1185 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	KRTAP1-3	Q8IUG1	177 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	SLITRK4	Q8IW52	837 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	RGS22	Q8NE09	1264 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	TMEM40	Q8WWA1	233 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	KREMEN1	Q96MU8	473 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	KIF2C	Q99661	725 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	ZSWIM5	Q9P217	1185 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	PCDHGB7	Q9Y5F8	929 aa		4.63	□□□□□ -1.67
CD44-238	ENST00000534296	SLC22A31	A6NKX4	558 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CLEC3A	O75596	197 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	RAC2	P15153	192 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	LTK	P29376	864 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CDCP2	Q5VXM1	449 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	FBXW10	Q5XX13	1052 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CBLL1	Q75N03	491 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	NLRC3	Q7RTR2	1065 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	ATG4D	Q86TL0	474 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-238	ENST00000534296	DTWD2	Q8NBA8	298 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	BAHD1	Q8TBE0	780 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-238	ENST00000534296	UBE2F	Q969M7	185 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CRBN	Q96SW2	442 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CCSER2	Q9H7U1	834 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	CARS2	Q9HA77	564 aa	Known RBP	4.62	□□□□□ -1.67
CD44-238	ENST00000534296	ATP13A1	Q9HD20	1204 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	PODXL2	Q9NZ53	605 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	DDX41	Q9UJV9	622 aa	Known RBP	4.62	□□□□□ -1.67
CD44-238	ENST00000534296	ST14	Q9Y5Y6	855 aa		4.62	□□□□□ -1.67
CD44-238	ENST00000534296	MEIS3P2	A8K0S8	358 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	TPP2	P29144	1249 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-238	ENST00000534296	CD96	P40200	585 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	CLC	Q05315	142 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	LDLRAD1	Q5T700	205 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	NFXL1	Q6ZNB6	911 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	NT5DC4	Q86YG4	428 aa		4.61	□□□□□ -1.67
CD44-238	ENST00000534296	PPP1R13L	Q8WUF5	828 aa		4.61	□□□□□ -1.67

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