RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 NTSR2O95665 410 aa22.19■■□□□ 1.14
PCF11-203ENST00000530304 V9GY48 417 aaPredicted RBP22.19■■□□□ 1.14
PCF11-203ENST00000530304 PRPF3O43395 683 aaKnown RBP22.18■■□□□ 1.14
PCF11-203ENST00000530304 CCDC34Q96HJ3 373 aa22.18■■□□□ 1.14
PCF11-203ENST00000530304 RIOK1Q9BRS2 568 aaKnown RBP22.18■■□□□ 1.14
PCF11-203ENST00000530304 ATP6V1AP38606 617 aa22.18■■□□□ 1.14
PCF11-203ENST00000530304 GYG1P46976 350 aa22.18■■□□□ 1.14
PCF11-203ENST00000530304 IFIT1BQ5T764 474 aaKnown RBP22.18■■□□□ 1.14
PCF11-203ENST00000530304 PAGE5Q96GU1 130 aa22.18■■□□□ 1.14
PCF11-203ENST00000530304 BCL9LQ86UU0 1499 aa22.18■■□□□ 1.14
PCF11-203ENST00000530304 PLEKHA8P1O95397 391 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 CASP1P29466 404 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 MAP3K9P80192 1104 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 SH3RF1Q7Z6J0 888 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 CATIPQ7Z7H3 387 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 SYMPKQ92797 1274 aaKnown RBP22.17■■□□□ 1.14
PCF11-203ENST00000530304 ST7Q9NRC1 585 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 ZNF804BA4D1E1 1349 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 CYP2D7A0A087X1C5 515 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 WNT7AO00755 349 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 TEX33O43247 280 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 CD44P16070 742 aaKnown RBP22.17■■□□□ 1.14
PCF11-203ENST00000530304 CT47A1Q5JQC4 288 aaPredicted RBP22.17■■□□□ 1.14
PCF11-203ENST00000530304 SPATA1Q5VX52 437 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 KLHL10Q6JEL2 608 aa22.17■■□□□ 1.14
PCF11-203ENST00000530304 APTXQ7Z2E3 356 aaKnown RBP22.17■■□□□ 1.14
PCF11-203ENST00000530304 ARGLU1Q9NWB6 273 aaPredicted RBP22.17■■□□□ 1.14
PCF11-203ENST00000530304 A0A0G2JS52 829 aa22.16■■□□□ 1.14
PCF11-203ENST00000530304 WTIPA6NIX2 430 aaPredicted RBP22.16■■□□□ 1.14
PCF11-203ENST00000530304 DESI2Q9BSY9 194 aa22.16■■□□□ 1.14
PCF11-203ENST00000530304 MYH2Q9UKX2 1941 aa22.16■■□□□ 1.14
PCF11-203ENST00000530304 AKR1B15C9JRZ8 316 aaPredicted RBP22.16■■□□□ 1.14
PCF11-203ENST00000530304 STX17P56962 302 aa22.16■■□□□ 1.14
PCF11-203ENST00000530304 DYNLL1P63167 89 aaKnown RBP22.16■■□□□ 1.14
PCF11-203ENST00000530304 PHLPP1O60346 1717 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 PNMA6AP0CW24 399 aaPredicted RBP22.15■■□□□ 1.14
PCF11-203ENST00000530304 CUL4BQ13620 913 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 TMCO3Q6UWJ1 677 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 FERMT2Q96AC1 680 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 RBM28Q9NW13 759 aaKnown RBP22.15■■□□□ 1.14
PCF11-203ENST00000530304 ZRANB2O95218 330 aaKnown RBP eCLIP22.15■■□□□ 1.142e-7■■■□□ 15.2
PCF11-203ENST00000530304 TROAPQ12815 778 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 MTF1Q14872 753 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 KIFC2Q96AC6 838 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 GNL3LQ9NVN8 582 aaKnown RBP22.15■■□□□ 1.14
PCF11-203ENST00000530304 COL4A1P02462 1669 aa22.15■■□□□ 1.14
PCF11-203ENST00000530304 SYNRGQ9UMZ2 1314 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 TPM1P09493 284 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 DPYDQ12882 1025 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 ZNF174Q15697 407 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 NOM1Q5C9Z4 860 aaKnown RBP22.14■■□□□ 1.14
PCF11-203ENST00000530304 IQCA1Q86XH1 822 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 PANX2Q96RD6 677 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 MRFAP1Q9Y605 127 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 DOT1LQ8TEK3 1739 aa22.14■■□□□ 1.14
PCF11-203ENST00000530304 GSDMAQ96QA5 445 aa22.14■■□□□ 1.13
PCF11-203ENST00000530304 CDC5LQ99459 802 aaKnown RBP22.14■■□□□ 1.13
PCF11-203ENST00000530304 CICQ96RK0 1608 aaPredicted RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 SOWAHDA6NJG2 315 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 BMP15O95972 392 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 SMYD4Q8IYR2 804 aaPredicted RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 BRIP1Q9BX63 1249 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 DUOX1Q9NRD9 1551 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 COL1A1P02452 1464 aaPredicted RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 RBL2Q08999 1139 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 KARSQ15046 597 aaKnown RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 NPY5RQ15761 445 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 IGSF22Q8N9C0 903 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 TNFRSF25Q93038 417 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 EPC1Q9H2F5 836 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 MRPL44Q9H9J2 332 aaKnown RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 BRMS1Q9HCU9 246 aa22.13■■□□□ 1.13
PCF11-203ENST00000530304 ADD3Q9UEY8 706 aaKnown RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 BAZ2AQ9UIF9 1905 aaKnown RBP22.13■■□□□ 1.13
PCF11-203ENST00000530304 ITPK1Q13572 414 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CDKAL1Q5VV42 579 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 COL14A1Q05707 1796 aaKnown RBP22.12■■□□□ 1.13
PCF11-203ENST00000530304 LOC102724428A0A0B4J2F2 783 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 PPP1R3GB7ZBB8 358 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 FGRP09769 529 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CCDC175P0C221 793 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CALM1P0DP23 149 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CALM2P0DP24 149 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CALM3P0DP25 149 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 SIK1P57059 783 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 PPP2R3AQ06190 1150 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 ACSBG1Q96GR2 724 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 CACNA1SQ13698 1873 aa22.12■■□□□ 1.13
PCF11-203ENST00000530304 PBX1P40424 430 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 PLA2G4AP47712 749 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 PTGDRQ13258 359 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 TTC38Q5R3I4 469 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 CTR9Q6PD62 1173 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 TMTC3Q6ZXV5 915 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 PPFIBP1Q86W92 1011 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 ZNF384Q8TF68 577 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 CPLX3Q8WVH0 158 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 CTAGE1Q96RT6 745 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 STRCQ7RTU9 1775 aa22.11■■□□□ 1.13
PCF11-203ENST00000530304 UBE4AQ14139 1066 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 152 ms