RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FAM204AQ9H8W3 233 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 ADGRG1Q9Y653 693 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 RANBP6O60518 1105 aaKnown RBP16.11■□□□□ 0.17
USP48-213ENST00000529637 IGHMBP2P38935 993 aaKnown RBP16.11■□□□□ 0.17
USP48-213ENST00000529637 MROH5Q6ZUA9 1318 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 ZNF18P17022 549 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 ARID4AP29374 1257 aaPredicted RBP16.11■□□□□ 0.17
USP48-213ENST00000529637 GRIN1Q05586 938 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 WTAPQ15007 396 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 KIF4BQ2VIQ3 1234 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 LCORLQ8N3X6 602 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 RPS6KA5O75582 802 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 GUCY2CP25092 1073 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 CORO7P57737 925 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 RTN1Q16799 776 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 NOM1Q5C9Z4 860 aaKnown RBP16.11■□□□□ 0.17
USP48-213ENST00000529637 AKNAD1Q5T1N1 836 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 RNF216Q9NWF9 866 aaPredicted RBP16.11■□□□□ 0.17
USP48-213ENST00000529637 RAI14Q9P0K7 980 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 MAN1B1Q9UKM7 699 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 KCNH3Q9ULD8 1083 aa16.11■□□□□ 0.17
USP48-213ENST00000529637 WDR19Q8NEZ3 1342 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 SPEF2Q9C093 1822 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 GUCY1A2P33402 732 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 RESP18Q5W5W9 173 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 CTR9Q6PD62 1173 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 MAP3K14Q99558 947 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 UBAC1Q9BSL1 405 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 YY1AP1Q9H869 796 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 ATP6V1AP38606 617 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 MDM2Q00987 491 aaPredicted RBP16.1■□□□□ 0.17
USP48-213ENST00000529637 RBL2Q08999 1139 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 DIS3L2Q8IYB7 885 aaKnown RBP16.1■□□□□ 0.17
USP48-213ENST00000529637 SLC35F6Q8N357 371 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 RIN2Q8WYP3 895 aaPredicted RBP16.1■□□□□ 0.17
USP48-213ENST00000529637 NIP7Q9Y221 180 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP48-213ENST00000529637 NWD2Q9ULI1 1742 aa16.1■□□□□ 0.17
USP48-213ENST00000529637 TCRBV5S4A2TA0A5A2 114 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 CYP7A1P22680 504 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 IL6STP40189 918 aaPredicted RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 GDAP1L1Q96MZ0 367 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 KRT23Q9C075 422 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 EIF3JO75822 258 aaKnown RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 NR1I3Q14994 352 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 ACRBPQ8NEB7 543 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 SDR42E1Q8WUS8 393 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 CNNM2Q9H8M5 875 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 UBR2Q8IWV8 1755 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 ADAMTS2O95450 1211 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 AKAP17AQ02040 695 aaKnown RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 CEP112Q8N8E3 955 aa16.09■□□□□ 0.17
USP48-213ENST00000529637 ZNF512BQ96KM6 892 aaPredicted RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 GEMIN8Q9NWZ8 242 aaKnown RBP16.09■□□□□ 0.17
USP48-213ENST00000529637 hCG_1642624A0A1W2PR95 340 aa16.08■□□□□ 0.17
USP48-213ENST00000529637 GSG1L2A8MUP6 293 aa16.08■□□□□ 0.17
USP48-213ENST00000529637 KIF5CO60282 957 aa16.08■□□□□ 0.17
USP48-213ENST00000529637 NCAPH2Q6IBW4 605 aa16.08■□□□□ 0.17
USP48-213ENST00000529637 AKR1B15C9JRZ8 316 aaPredicted RBP16.08■□□□□ 0.16
USP48-213ENST00000529637 ERLIN1O75477 346 aa16.08■□□□□ 0.16
USP48-213ENST00000529637 NTRK3Q16288 839 aa16.08■□□□□ 0.16
USP48-213ENST00000529637 CCDC152Q4G0S7 254 aa16.08■□□□□ 0.16
USP48-213ENST00000529637 HSP90B2PQ58FF3 399 aa16.08■□□□□ 0.16
USP48-213ENST00000529637 AEBP2Q6ZN18 517 aaPredicted RBP16.08■□□□□ 0.16
USP48-213ENST00000529637 WASF1Q92558 559 aa16.08■□□□□ 0.16
USP48-213ENST00000529637 FAM217BQ9NTX9 383 aaPredicted RBP16.08■□□□□ 0.16
USP48-213ENST00000529637 ERVV-1B6SEH8 477 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 NR5A1Q13285 461 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 NOSTRINQ8IVI9 506 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 KRI1Q8N9T8 703 aaKnown RBP16.07■□□□□ 0.16
USP48-213ENST00000529637 PPP6R2O75170 966 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 SYF2O95926 243 aaKnown RBP16.07■□□□□ 0.16
USP48-213ENST00000529637 ZNF34Q8IZ26 560 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 FAM71BQ8TC56 605 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 RNF40O75150 1001 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 BICDL1Q6ZP65 573 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 SGMS1Q86VZ5 419 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 GPATCH11Q8N954 259 aa16.07■□□□□ 0.16
USP48-213ENST00000529637 COBLO75128 1261 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 FGFR2P21802 821 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 PPM1EQ8WY54 764 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 RABEP2Q9H5N1 569 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 CCDC87Q9NVE4 849 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 CTAGE9A4FU28 777 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 POLR2DO15514 142 aaKnown RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 PRDM1O75626 825 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 LIFRP42702 1097 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 CRKLP46109 303 aaKnown RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 STX17P56962 302 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 IGSF22Q8N9C0 903 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 MKRN1Q9UHC7 482 aaKnown RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 SERTAD1Q9UHV2 236 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 HOOK1Q9UJC3 728 aaKnown RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 TACC3Q9Y6A5 838 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 BCL9O00512 1426 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 FAM237AA0A1B0GTK4 181 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 FMNL1O95466 1100 aaPredicted RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 GYG1P46976 350 aa16.06■□□□□ 0.16
USP48-213ENST00000529637 APTXQ7Z2E3 356 aaKnown RBP16.06■□□□□ 0.16
USP48-213ENST00000529637 CABP5Q9NP86 173 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 756.3 ms