RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CYP2D6P10635 497 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 MAPK4P31152 587 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 SHMT1P34896 483 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 USP14P54578 494 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 ERVK-9P63128 1117 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 ERVK-24P63145 666 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 SEPT2Q15019 361 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 UBE2Q1Q7Z7E8 422 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 PAWRQ96IZ0 340 aaKnown RBP15.72■□□□□ 0.11
CPSF1-204ENST00000529288 PAK6Q9NQU5 681 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-204ENST00000529288 NR2E3Q9Y5X4 410 aa15.72■□□□□ 0.11
CPSF1-204ENST00000529288 SIPA1L1O43166 1804 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 ATAD5Q96QE3 1844 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 PTPRFP10586 1907 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 PRKAB2O43741 272 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 EVI5O60447 810 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 PLEKHH3Q7Z736 793 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 GTF3C2Q8WUA4 911 aaPredicted RBP15.71■□□□□ 0.11
CPSF1-204ENST00000529288 TRIB2Q92519 343 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 PORCNQ9H237 461 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 PCDH10Q9P2E7 1040 aa15.71■□□□□ 0.11
CPSF1-204ENST00000529288 RPTORQ8N122 1335 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 LOC285556D6RIA3 1793 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 MGAMO43451 1857 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 MYO5AQ9Y4I1 1855 aaKnown RBP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 TCRBV5S4A2TA0A5A2 114 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 MBD4O95243 580 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 ZKSCAN1P17029 563 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 VCAM1P19320 739 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 CATSPERGQ6ZRH7 1159 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 GPR142Q7Z601 462 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 NECAB2Q7Z6G3 386 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 SLC44A5Q8NCS7 719 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 DIS3LQ8TF46 1054 aaKnown RBP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 SOCS4Q8WXH5 440 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 DYNLL2Q96FJ2 89 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 C12orf42Q96LP6 360 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 KIAA1683Q9H0B3 1180 aa15.7■□□□□ 0.1
CPSF1-204ENST00000529288 RPAP3Q9H6T3 665 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 DCP1AQ9NPI6 582 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-204ENST00000529288 PRKAR2AP13861 404 aaKnown RBP15.69■□□□□ 0.1
CPSF1-204ENST00000529288 ATP5JP18859 108 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 GUCY1A2P33402 732 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 ADD2P35612 726 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 RGS2P41220 211 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 FXR1P51114 621 aaKnown RBP eCLIP15.69■□□□□ 0.1
CPSF1-204ENST00000529288 CCNA1P78396 465 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 SAMD1Q6SPF0 538 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-204ENST00000529288 LRRCC1Q9C099 1032 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 CRISPLD2Q9H0B8 497 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 RABGAP1Q9Y3P9 1069 aa15.69■□□□□ 0.1
CPSF1-204ENST00000529288 GLRX3O76003 335 aaKnown RBP15.68■□□□□ 0.1
CPSF1-204ENST00000529288 CHGBP05060 677 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 GABPAQ06546 454 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 CCL14Q16627 93 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 POTEEQ6S8J3 1075 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 AMOTL1Q8IY63 956 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 HAUS7Q99871 368 aa15.68■□□□□ 0.1
CPSF1-204ENST00000529288 RBM27Q9P2N5 1060 aaKnown RBP15.68■□□□□ 0.1
CPSF1-204ENST00000529288 CYP2D7A0A087X1C5 515 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 CNMDO75829 334 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 CAPN2P17655 700 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 ATP2B2Q01814 1243 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 TRMT44Q8IYL2 757 aaKnown RBP15.67■□□□□ 0.1
CPSF1-204ENST00000529288 DDRGK1Q96HY6 314 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 TANGO6Q9C0B7 1094 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 SLC4A4Q9Y6R1 1079 aa15.67■□□□□ 0.1
CPSF1-204ENST00000529288 A0A1W2PRG0 241 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 XRCC5P13010 732 aaKnown RBP15.66■□□□□ 0.1
CPSF1-204ENST00000529288 CACNB2Q08289 660 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-204ENST00000529288 MAP2K5Q13163 448 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 MORN1Q5T089 497 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 ZSCAN25Q6NSZ9 544 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 CLEC10AQ8IUN9 316 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 C7orf61Q8IZ16 206 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 ATP8A2Q9NTI2 1148 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 BTBD7Q9P203 1132 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 SWAP70Q9UH65 585 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 IVNS1ABPQ9Y6Y0 642 aa15.66■□□□□ 0.1
CPSF1-204ENST00000529288 CDK5RAP2Q96SN8 1893 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 MYH1P12882 1939 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 SPDYE16A6NNV3 312 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-204ENST00000529288 USP17L12C9JPN9 530 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 USP17L21D6R901 530 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 SMIM22K7EJ46 135 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 RAD21O60216 631 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 AKR1B1P15121 316 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 CCND3P30281 292 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-204ENST00000529288 TMEM179Q6ZVK1 233 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 SPICE1Q8N0Z3 855 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 STK11IPQ8N1F8 1099 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 ANKLE1Q8NAG6 615 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 USP6NLQ92738 828 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 APBA2Q99767 749 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 NBPF3Q9H094 633 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 C11orf49Q9H6J7 331 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 ARHGEF10LQ9HCE6 1279 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 FOCADQ5VW36 1801 aa15.65■□□□□ 0.1
CPSF1-204ENST00000529288 PTPREP23469 700 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms