RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 MRS2Q9HD23 443 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 VTI1BQ9UEU0 232 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 CEP131Q9UPN4 1083 aa9.26□□□□□ -0.93
NUP54-209ENST00000510569 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.25□□□□□ -0.93
NUP54-209ENST00000510569 F6X3S4 739 aa9.25□□□□□ -0.93
NUP54-209ENST00000510569 PLCG1P19174 1290 aa9.25□□□□□ -0.93
NUP54-209ENST00000510569 FZD5Q13467 585 aa9.25□□□□□ -0.93
NUP54-209ENST00000510569 PWP1Q13610 501 aa9.25□□□□□ -0.93
NUP54-209ENST00000510569 TMPRSS7Q7RTY8 843 aa9.25□□□□□ -0.93
NUP54-209ENST00000510569 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.25□□□□□ -0.93
NUP54-209ENST00000510569 FYB2Q5VWT5 728 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 SLFN12Q8IYM2 578 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 FAM13CQ8NE31 585 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 CCDC120Q96HB5 630 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 ALPK1Q96QP1 1244 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 FAM53CQ9NYF3 392 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 ZSWIM5Q9P217 1185 aa9.24□□□□□ -0.93
NUP54-209ENST00000510569 ESR1P03372 595 aa9.23□□□□□ -0.93
NUP54-209ENST00000510569 YARSP54577 528 aaKnown RBP9.23□□□□□ -0.93
NUP54-209ENST00000510569 KRTAP4-8A0A0G2JLE6 195 aa9.22□□□□□ -0.93
NUP54-209ENST00000510569 GBP2P32456 591 aaPredicted RBP9.22□□□□□ -0.93
NUP54-209ENST00000510569 MESP2Q0VG99 397 aa9.22□□□□□ -0.93
NUP54-209ENST00000510569 GAB4Q2WGN9 574 aa9.22□□□□□ -0.93
NUP54-209ENST00000510569 RELL1Q8IUW5 271 aa9.22□□□□□ -0.93
NUP54-209ENST00000510569 KIRREL1Q96J84 757 aa9.22□□□□□ -0.93
NUP54-209ENST00000510569 DUSP15Q9H1R2 295 aaPredicted RBP9.22□□□□□ -0.93
NUP54-209ENST00000510569 POLR3KQ9Y2Y1 108 aaPredicted RBP9.22□□□□□ -0.93
NUP54-209ENST00000510569 LRRC10BA6NIK2 292 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 UPK3BL1B0FP48 263 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 UPK3BL2E5RIL1 263 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 GLI1P08151 1106 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 SRFP11831 508 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 GARTP22102 1010 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 ERMP1Q7Z2K6 904 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 GPR62Q9BZJ7 368 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 GZF1Q9H116 711 aaPredicted RBP9.21□□□□□ -0.94
NUP54-209ENST00000510569 REV1Q9UBZ9 1251 aa9.21□□□□□ -0.94
NUP54-209ENST00000510569 MPP2Q14168 576 aa9.2□□□□□ -0.94
NUP54-209ENST00000510569 SNAP47Q5SQN1 464 aa9.2□□□□□ -0.94
NUP54-209ENST00000510569 DTWD2Q8NBA8 298 aa9.2□□□□□ -0.94
NUP54-209ENST00000510569 BHLHE22Q8NFJ8 381 aaPredicted RBP9.2□□□□□ -0.94
NUP54-209ENST00000510569 RNF141Q8WVD5 230 aa9.2□□□□□ -0.94
NUP54-209ENST00000510569 TRIT1Q9H3H1 467 aaKnown RBP9.2□□□□□ -0.94
NUP54-209ENST00000510569 KCNQ5Q9NR82 932 aa9.2□□□□□ -0.94
NUP54-209ENST00000510569 HTR3BO95264 441 aa9.19□□□□□ -0.94
NUP54-209ENST00000510569 REC114Q7Z4M0 266 aa9.19□□□□□ -0.94
NUP54-209ENST00000510569 LIN37Q96GY3 246 aaPredicted RBP9.19□□□□□ -0.94
NUP54-209ENST00000510569 FAM84AQ96KN4 292 aa9.19□□□□□ -0.94
NUP54-209ENST00000510569 SLAMF8Q9P0V8 285 aa9.19□□□□□ -0.94
NUP54-209ENST00000510569 FAM160A1Q05DH4 1040 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 ZNF124Q15973 351 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 FAM196AQ6ZSG2 479 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 KSR1Q8IVT5 923 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 GOLM1Q8NBJ4 401 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 LRRC3Q9BY71 257 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 KBTBD4Q9NVX7 518 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 TMEM59LQ9UK28 342 aa9.18□□□□□ -0.94
NUP54-209ENST00000510569 DNAJC25-GNG10A0A024R161 153 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 WASH4PA8MWX3 477 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 TPP2P29144 1249 aaPredicted RBP9.17□□□□□ -0.94
NUP54-209ENST00000510569 MLANAQ16655 118 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 RALGPS1Q5JS13 557 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 ASPNQ9BXN1 380 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 KCNH3Q9ULD8 1083 aa9.17□□□□□ -0.94
NUP54-209ENST00000510569 GRIN3BO60391 1043 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 DNAJA2O60884 412 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 PKN1Q16512 942 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 TMEM67Q5HYA8 995 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 TSPYL5Q86VY4 417 aaPredicted RBP9.16□□□□□ -0.94
NUP54-209ENST00000510569 CREG2Q8IUH2 290 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 FBXO27Q8NI29 283 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 SLC38A3Q99624 504 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 GPATCH2Q9NW75 528 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 KLHL3Q9UH77 587 aa9.16□□□□□ -0.94
NUP54-209ENST00000510569 ROBO2Q9HCK4 1378 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 DBX1A6NMT0 343 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 MINDY4BA8MYZ0 360 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 CHURC1-FNTBB4DL54 471 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 MRPL58Q14197 206 aaKnown RBP9.15□□□□□ -0.94
NUP54-209ENST00000510569 TTC6Q86TZ1 520 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 CCDC74BQ96LY2 380 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 KREMEN1Q96MU8 473 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 COPRSQ9NQ92 184 aa9.15□□□□□ -0.94
NUP54-209ENST00000510569 RAC2P15153 192 aa9.14□□□□□ -0.95
NUP54-209ENST00000510569 BAHD1Q8TBE0 780 aaPredicted RBP9.14□□□□□ -0.95
NUP54-209ENST00000510569 DUSP13Q9UII6 198 aa9.14□□□□□ -0.95
NUP54-209ENST00000510569 GREM1O60565 184 aa9.13□□□□□ -0.95
NUP54-209ENST00000510569 HPXP02790 462 aa9.13□□□□□ -0.95
NUP54-209ENST00000510569 FBXL19Q6PCT2 694 aa9.13□□□□□ -0.95
NUP54-209ENST00000510569 PRR23BQ6ZRT6 265 aa9.13□□□□□ -0.95
NUP54-209ENST00000510569 BCL2L13Q9BXK5 485 aa9.13□□□□□ -0.95
NUP54-209ENST00000510569 RBM47A0AV96 593 aaKnown RBP9.12□□□□□ -0.95
NUP54-209ENST00000510569 LRRN2O75325 713 aa9.12□□□□□ -0.95
NUP54-209ENST00000510569 TNNI2P48788 182 aa9.12□□□□□ -0.95
NUP54-209ENST00000510569 CWF19L2Q2TBE0 894 aaKnown RBP9.12□□□□□ -0.95
NUP54-209ENST00000510569 MPZL3Q6UWV2 235 aa9.12□□□□□ -0.95
NUP54-209ENST00000510569 SUPT16HQ9Y5B9 1047 aaKnown RBP9.12□□□□□ -0.95
NUP54-209ENST00000510569 TSPAN15O95858 294 aa9.11□□□□□ -0.95
NUP54-209ENST00000510569 EIF4A3P38919 411 aaKnown RBP9.11□□□□□ -0.95
NUP54-209ENST00000510569 EGR3Q06889 387 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms