RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 USP2O75604 605 aaPredicted RBP22.75■■□□□ 1.23
USP39-218ENST00000493829 GUCY1A2P33402 732 aa22.75■■□□□ 1.23
USP39-218ENST00000493829 HSCBQ8IWL3 235 aa22.75■■□□□ 1.23
USP39-218ENST00000493829 IGKV6D-41A0A0C4DH26 115 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 KLF18A0A0U1RQI7 1052 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 ICA1Q05084 483 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 KLRG1Q96E93 195 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 MYL10Q9BUA6 226 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 BRPF3Q9ULD4 1205 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 MTMR7Q9Y216 660 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 CCDC69A6NI79 296 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 LARGE1O95461 756 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 NT5C2P49902 561 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 ANKRD1Q15327 319 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 RCSD1Q6JBY9 416 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 LRRC47Q8N1G4 583 aaKnown RBP22.74■■□□□ 1.23
USP39-218ENST00000493829 ZNF784Q8NCA9 323 aaPredicted RBP22.74■■□□□ 1.23
USP39-218ENST00000493829 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.74■■□□□ 1.23
USP39-218ENST00000493829 TCP11L1Q9NUJ3 509 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 MTMR4Q9NYA4 1195 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 TPCN1Q9ULQ1 816 aa22.74■■□□□ 1.23
USP39-218ENST00000493829 CTNND1O60716 968 aaKnown RBP22.73■■□□□ 1.23
USP39-218ENST00000493829 CELF2O95319 508 aaKnown RBP22.73■■□□□ 1.23
USP39-218ENST00000493829 STK3Q13188 491 aa22.73■■□□□ 1.23
USP39-218ENST00000493829 AGXT2Q9BYV1 514 aa22.73■■□□□ 1.23
USP39-218ENST00000493829 TBC1D2Q9BYX2 928 aa22.73■■□□□ 1.23
USP39-218ENST00000493829 ZNF112Q9UJU3 913 aa22.73■■□□□ 1.23
USP39-218ENST00000493829 MYH4Q9Y623 1939 aa22.73■■□□□ 1.23
USP39-218ENST00000493829 GOLGA8BA8MQT2 603 aa22.72■■□□□ 1.23
USP39-218ENST00000493829 RXRAP19793 462 aa22.72■■□□□ 1.23
USP39-218ENST00000493829 IREB2P48200 963 aaKnown RBP22.72■■□□□ 1.23
USP39-218ENST00000493829 SCYL3Q8IZE3 742 aa22.72■■□□□ 1.23
USP39-218ENST00000493829 ALDH8A1Q9H2A2 487 aaPredicted RBP22.72■■□□□ 1.23
USP39-218ENST00000493829 KAT14Q9H8E8 782 aa22.72■■□□□ 1.23
USP39-218ENST00000493829 CLIP2Q9UDT6 1046 aa22.72■■□□□ 1.23
USP39-218ENST00000493829 ITGBL1O95965 494 aaPredicted RBP22.71■■□□□ 1.23
USP39-218ENST00000493829 ASNSP08243 561 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 EEF2P13639 858 aaKnown RBP22.71■■□□□ 1.23
USP39-218ENST00000493829 LIFRP42702 1097 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 VGLL4Q14135 290 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 MICU3Q86XE3 530 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 CCDC144CPQ8IYA2 1237 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 TMEM47Q9BQJ4 181 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 KANSL2Q9H9L4 492 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 PICK1Q9NRD5 415 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 LIMCH1Q9UPQ0 1083 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 UBE2Q2LH0YL09 131 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 RAD21O60216 631 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 TTLL1O95922 423 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 CCDC178Q5BJE1 867 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 RASGRP2Q7LDG7 609 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 DGKHQ86XP1 1220 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 SNX21Q969T3 373 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 MTA3Q9BTC8 594 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 SLC12A7Q9Y666 1083 aa22.71■■□□□ 1.23
USP39-218ENST00000493829 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.7■■□□□ 1.22
USP39-218ENST00000493829 ARMC9Q7Z3E5 817 aa22.7■■□□□ 1.22
USP39-218ENST00000493829 ZNF654Q8IZM8 581 aa22.7■■□□□ 1.22
USP39-218ENST00000493829 NUP133Q8WUM0 1156 aa22.7■■□□□ 1.22
USP39-218ENST00000493829 CLMNQ96JQ2 1002 aa22.7■■□□□ 1.22
USP39-218ENST00000493829 CSADQ9Y600 493 aa22.7■■□□□ 1.22
USP39-218ENST00000493829 K7ELQ4 463 aaPredicted RBP22.69■■□□□ 1.22
USP39-218ENST00000493829 MCM2P49736 904 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 MAP3K9P80192 1104 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 ME3Q16798 604 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 APOA5Q6Q788 366 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 SGMS1Q86VZ5 419 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 FBXL16Q8N461 479 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 NECAB1Q8N987 351 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 PNMA1Q8ND90 353 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 SMC1BQ8NDV3 1235 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 ACER1Q8TDN7 264 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 TRPM7Q96QT4 1865 aa22.69■■□□□ 1.22
USP39-218ENST00000493829 TOP1P11387 765 aaKnown RBP22.68■■□□□ 1.22
USP39-218ENST00000493829 ECE1P42892 770 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 ZYXQ15942 572 aaKnown RBP22.68■■□□□ 1.22
USP39-218ENST00000493829 CATIPQ7Z7H3 387 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 SIAH1Q8IUQ4 282 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 TMX3Q96JJ7 454 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 ELP3Q9H9T3 547 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 GBA2Q9HCG7 927 aaPredicted RBP22.68■■□□□ 1.22
USP39-218ENST00000493829 SNCAIPQ9Y6H5 919 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 DTNBO60941 627 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 SLC4A3P48751 1232 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 CCT2P78371 535 aaKnown RBP22.68■■□□□ 1.22
USP39-218ENST00000493829 BECN1Q14457 450 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 SYNE3Q6ZMZ3 975 aa22.68■■□□□ 1.22
USP39-218ENST00000493829 A0A1W2PRG0 241 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 ZBTB43O43298 467 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 PTPRAP18433 802 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 PDIA3P30101 505 aaKnown RBP22.67■■□□□ 1.22
USP39-218ENST00000493829 NOL9Q5SY16 702 aaKnown RBP22.67■■□□□ 1.22
USP39-218ENST00000493829 ANKRD13AQ8IZ07 590 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 TMTC2Q8N394 836 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 CNKSR2Q8WXI2 1034 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 ANKS1AQ92625 1134 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 FEZ1Q99689 392 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 NCOA5Q9HCD5 579 aaKnown RBP22.67■■□□□ 1.22
USP39-218ENST00000493829 ARHGEF10LQ9HCE6 1279 aa22.67■■□□□ 1.22
USP39-218ENST00000493829 NYAP2Q9P242 653 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms