RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 AKR1B1P15121 316 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 PPARAQ07869 468 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 TAF1CQ15572 869 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-208ENST00000484246 KIAA1683Q9H0B3 1180 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 ZFYVE28Q9HCC9 887 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 LOC285556D6RIA3 1793 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 ATAD5Q96QE3 1844 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 PDHXO00330 501 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 SLC3A2P08195 630 aaKnown RBP18.93■□□□□ 0.62
UPF3A-208ENST00000484246 RASA1P20936 1047 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 CHMLP26374 656 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 MTMR2Q13614 643 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 SEPT2Q15019 361 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 PARK7Q99497 189 aaKnown RBP18.93■□□□□ 0.62
UPF3A-208ENST00000484246 DSCC1Q9BVC3 393 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 R3HDMLQ9H3Y0 253 aa18.93■□□□□ 0.62
UPF3A-208ENST00000484246 BAZ2AQ9UIF9 1905 aaKnown RBP18.92■□□□□ 0.62
UPF3A-208ENST00000484246 TLR2O60603 784 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 FGAP02671 866 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 FGRP09769 529 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 ATXN8OSP0DMR3 200 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 HMGCS2P54868 508 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 RAB3GAP1Q15042 981 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 RUFY2Q8WXA3 655 aa18.92■□□□□ 0.62
UPF3A-208ENST00000484246 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.92■□□□□ 0.62
UPF3A-208ENST00000484246 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.92■□□□□ 0.62
UPF3A-208ENST00000484246 USP14P54578 494 aa18.91■□□□□ 0.62
UPF3A-208ENST00000484246 PDE4BQ07343 736 aa18.91■□□□□ 0.62
UPF3A-208ENST00000484246 PABPC4Q13310 644 aaKnown RBP eCLIP18.91■□□□□ 0.62
UPF3A-208ENST00000484246 USP17L2Q6R6M4 530 aa18.91■□□□□ 0.62
UPF3A-208ENST00000484246 GADL1Q6ZQY3 521 aa18.91■□□□□ 0.62
UPF3A-208ENST00000484246 ZNF296Q8WUU4 475 aaPredicted RBP18.91■□□□□ 0.62
UPF3A-208ENST00000484246 IL25Q9H293 177 aa18.91■□□□□ 0.62
UPF3A-208ENST00000484246 PTPRFP10586 1907 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 IGKV6D-41A0A0C4DH26 115 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 MPHOSPH10O00566 681 aaKnown RBP18.9■□□□□ 0.62
UPF3A-208ENST00000484246 FKTNO75072 461 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 PCP11498 1178 aaKnown RBP18.9■□□□□ 0.62
UPF3A-208ENST00000484246 HOXA7P31268 230 aaPredicted RBP18.9■□□□□ 0.62
UPF3A-208ENST00000484246 NT5C2P49902 561 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 ICA1Q05084 483 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 TREML2Q5T2D2 321 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 ACER1Q8TDN7 264 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 KANSL2Q9H9L4 492 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 MKNK2Q9HBH9 465 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 EMILIN3Q9NT22 766 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 TMOD4Q9NZQ9 345 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 PNMA3Q9UL41 463 aa18.9■□□□□ 0.62
UPF3A-208ENST00000484246 SGSM2O43147 1006 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 ORC4O43929 436 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 C17orf99Q6UX52 265 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 SKAP1Q86WV1 359 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 SIAH1Q8IUQ4 282 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 FEZ1Q99689 392 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 SH2D4AQ9H788 454 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 SYNPO2Q9UMS6 1093 aa18.89■□□□□ 0.61
UPF3A-208ENST00000484246 GREB1LQ9C091 1923 aaPredicted RBP18.89■□□□□ 0.61
UPF3A-208ENST00000484246 A0A1W2PRG0 241 aa18.88■□□□□ 0.61
UPF3A-208ENST00000484246 ARHGEF10LQ9HCE6 1279 aa18.88■□□□□ 0.61
UPF3A-208ENST00000484246 TMX2Q9Y320 296 aa18.88■□□□□ 0.61
UPF3A-208ENST00000484246 BCRP11274 1271 aa18.87■□□□□ 0.61
UPF3A-208ENST00000484246 ZNF444Q8N0Y2 327 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-208ENST00000484246 NEDD1Q8NHV4 660 aa18.87■□□□□ 0.61
UPF3A-208ENST00000484246 LPAR1Q92633 364 aa18.87■□□□□ 0.61
UPF3A-208ENST00000484246 NYAP2Q9P242 653 aa18.87■□□□□ 0.61
UPF3A-208ENST00000484246 PRDM1O75626 825 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 CYP2C8P10632 490 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 VCAM1P19320 739 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 SP3Q02447 781 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 DGKZQ13574 1117 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 STAG1Q8WVM7 1258 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 ERO1AQ96HE7 468 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 NBPF3Q9H094 633 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 VCPKMTQ9H867 229 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 CTNNA3Q9UI47 895 aa18.86■□□□□ 0.61
UPF3A-208ENST00000484246 EEF2P13639 858 aaKnown RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 OSBPP22059 807 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 GCLCP48506 637 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 NOVP48745 357 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 CTDSPL2Q05D32 466 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 PPP4R3BQ5MIZ7 849 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 CTU1Q7Z7A3 348 aaKnown RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 CLEC10AQ8IUN9 316 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 GTF3C2Q8WUA4 911 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 ASCC2Q9H1I8 757 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 RNF41Q9H4P4 317 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-208ENST00000484246 TACC3Q9Y6A5 838 aa18.85■□□□□ 0.61
UPF3A-208ENST00000484246 AKNAD1Q5T1N1 836 aa18.84■□□□□ 0.61
UPF3A-208ENST00000484246 TBC1D10CQ8IV04 446 aa18.84■□□□□ 0.61
UPF3A-208ENST00000484246 STK11IPQ8N1F8 1099 aa18.84■□□□□ 0.61
UPF3A-208ENST00000484246 MTMR4Q9NYA4 1195 aa18.84■□□□□ 0.61
UPF3A-208ENST00000484246 USP17L15C9J2P7 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L13C9JLJ4 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L11C9JVI0 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L18D6R9N7 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L22D6RA61 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L17D6RBQ6 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L19D6RCP7 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 USP17L20D6RJB6 530 aa18.83■□□□□ 0.6
UPF3A-208ENST00000484246 ZNF213O14771 459 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms