RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GOLM1Q8NBJ4 401 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 RNF214Q8ND24 703 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 FBXO27Q8NI29 283 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 GATA6Q92908 595 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 TMEM74Q96NL1 305 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 DPH2Q9BQC3 489 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 CORINQ9Y5Q5 1042 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 DHX29Q7Z478 1369 aaKnown RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 AGLP35573 1532 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 TLR3O15455 904 aaKnown RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 GRIN3BO60391 1043 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ETF1P62495 437 aaKnown RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 FANCCQ00597 558 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 RING1Q06587 406 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 MLECQ14165 292 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 MAP7Q14244 749 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 FAM50AQ14320 339 aaKnown RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ZBTB37Q5TC79 503 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 SEZ6L2Q6UXD5 910 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ERMP1Q7Z2K6 904 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ZAR1Q86SH2 424 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 ARHGEF5Q12774 1597 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 HECW2Q9P2P5 1572 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 SYNGAP1Q96PV0 1343 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 TCOF1Q13428 1488 aaKnown RBP3.72□□□□□ -1.81
VPS13A-208ENST00000423463 REREQ9P2R6 1566 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 SCO2A0A1W2PP80 73 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 CRKP46108 304 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 SNAP47Q5SQN1 464 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 FBXL19Q6PCT2 694 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 XAGE3Q8WTP9 111 aa3.72□□□□□ -1.81
VPS13A-208ENST00000423463 A2MP01023 1474 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 ATP7AQ04656 1500 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 LEFTY1O75610 366 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 MED26O95402 600 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 FAM87AP0C7U9 286 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 HOXA10P31260 410 aaPredicted RBP3.71□□□□□ -1.82
VPS13A-208ENST00000423463 SSTR4P31391 388 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 ZNF76P36508 570 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 HDXQ7Z353 690 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 RELL1Q8IUW5 271 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 BCL11AQ9H165 835 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 LRRC4CQ9HCJ2 640 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 U3KQE9 123 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS13A-208ENST00000423463 ABCC5O15440 1437 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 DIP2CQ9Y2E4 1556 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 KIDINS220Q9ULH0 1771 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 KIF3BO15066 747 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 GSC2O15499 205 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 RLBP1P12271 317 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 GRK4P32298 578 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 RBM25P49756 843 aaKnown RBP3.71□□□□□ -1.82
VPS13A-208ENST00000423463 CYFIP1Q7L576 1253 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 FAM181AQ8N9Y4 354 aa3.71□□□□□ -1.82
VPS13A-208ENST00000423463 FAM221AA4D161 298 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 PRR19A6NJB7 356 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 GFRA2O00451 464 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 FANCGO15287 622 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 BPNT1O95861 308 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 EIF4A3P38919 411 aaKnown RBP3.7□□□□□ -1.82
VPS13A-208ENST00000423463 LMNB2Q03252 620 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 GGT6Q6P531 493 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 TOP6BLQ8N6T0 577 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 RSRP1Q9BUV0 290 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 OSBPL1AQ9BXW6 950 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 UBP1Q9NZI7 540 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ADAMTS1Q9UHI8 967 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ANKRD30AQ9BXX3 1397 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 DAPK1P53355 1430 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 PTPN23Q9H3S7 1636 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ADAMTSL3P82987 1691 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ABCA6Q8N139 1617 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 INO80Q9ULG1 1556 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-208ENST00000423463 PTPRMP28827 1452 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 SHANK2Q9UPX8 1470 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ITGAEP38570 1179 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 RPL6Q02878 288 aaKnown RBP3.7□□□□□ -1.82
VPS13A-208ENST00000423463 CDC37L1Q7L3B6 337 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 ARMCX6Q7L4S7 300 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 GATAD2BQ8WXI9 593 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 DUSP23Q9BVJ7 150 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 RRP7BPQ9NSQ0 103 aa3.7□□□□□ -1.82
VPS13A-208ENST00000423463 BCORL1Q5H9F3 1711 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 MAST1Q9Y2H9 1570 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 CNTLNQ9NXG0 1405 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 CILPO75339 1184 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 PGRP06401 933 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 GARTP22102 1010 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 RACK1P63244 317 aaKnown RBP3.69□□□□□ -1.82
VPS13A-208ENST00000423463 PRAMEF13Q5VWM6 474 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 USP48Q86UV5 1035 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 ZNF296Q8WUU4 475 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-208ENST00000423463 PSMG3-AS1Q96PY0 264 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 WNT10AQ9GZT5 417 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 PCOLCE2Q9UKZ9 415 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 NCOA1Q15788 1441 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 KIF15Q9NS87 1388 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 PWP1Q13610 501 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms