RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SV2BQ7L1I2 683 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 HEXIM2Q96MH2 286 aaKnown RBP5.68□□□□□ -1.5
HMGB1-204ENST00000399489 OSBPL7Q9BZF2 842 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 FAM53CQ9NYF3 392 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 MAPK8IP1Q9UQF2 711 aa5.68□□□□□ -1.5
HMGB1-204ENST00000399489 PAGE1O75459 146 aa5.67□□□□□ -1.5
HMGB1-204ENST00000399489 USP17L7P0C7H9 530 aa5.67□□□□□ -1.5
HMGB1-204ENST00000399489 ZNF746Q6NUN9 644 aaPredicted RBP5.67□□□□□ -1.5
HMGB1-204ENST00000399489 ARMCX6Q7L4S7 300 aa5.67□□□□□ -1.5
HMGB1-204ENST00000399489 TGIF2Q9GZN2 237 aa5.67□□□□□ -1.5
HMGB1-204ENST00000399489 TPX2Q9ULW0 747 aaKnown RBP5.67□□□□□ -1.5
HMGB1-204ENST00000399489 PRAMEF27A3QJZ7 478 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 PARNO95453 639 aaKnown RBP5.66□□□□□ -1.5
HMGB1-204ENST00000399489 P4HBP07237 508 aaKnown RBP5.66□□□□□ -1.5
HMGB1-204ENST00000399489 MPRIPQ6WCQ1 1025 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 FLAD1Q8NFF5 587 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 CCDC120Q96HB5 630 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 GMLQ99445 158 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 CCSER2Q9H7U1 834 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 SNCAIPQ9Y6H5 919 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 U3KQE9 123 aa5.66□□□□□ -1.5
HMGB1-204ENST00000399489 EIF4BP23588 611 aaKnown RBP5.65□□□□□ -1.5
HMGB1-204ENST00000399489 AFMP43652 599 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 ETF1P62495 437 aaKnown RBP5.65□□□□□ -1.5
HMGB1-204ENST00000399489 FANCCQ00597 558 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 RING1Q06587 406 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 TCEAL1Q15170 157 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 KCNMB1Q16558 191 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 SFRP5Q5T4F7 317 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 FAM214BQ7L5A3 538 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 MFSD2AQ8NA29 543 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 CAPN10Q9HC96 672 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 LMCD1Q9NZU5 365 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 ADAMTS6Q9UKP5 1117 aa5.65□□□□□ -1.5
HMGB1-204ENST00000399489 CARMIL2Q6F5E8 1435 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 LDHBP07195 334 aaKnown RBP5.65□□□□□ -1.51
HMGB1-204ENST00000399489 CELA3AP09093 270 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 CYP7A1P22680 504 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 IRX6P78412 446 aaPredicted RBP5.65□□□□□ -1.51
HMGB1-204ENST00000399489 ZNF648Q5T619 568 aaPredicted RBP5.65□□□□□ -1.51
HMGB1-204ENST00000399489 ZSWIM9Q86XI8 627 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 SPACA3Q8IXA5 215 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 WNT10AQ9GZT5 417 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 ZSWIM4Q9H7M6 989 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 WWC3Q9ULE0 1092 aa5.65□□□□□ -1.51
HMGB1-204ENST00000399489 NTF4P34130 210 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 LRFN4Q6PJG9 635 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 JAZF1Q86VZ6 243 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 HID1Q8IV36 788 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 TMEM87AQ8NBN3 555 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 COX4I2Q96KJ9 171 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 MIPEPQ99797 713 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 BRINP2Q9C0B6 783 aa5.64□□□□□ -1.51
HMGB1-204ENST00000399489 METTL5Q9NRN9 209 aaKnown RBP5.64□□□□□ -1.51
HMGB1-204ENST00000399489 NOP58Q9Y2X3 529 aaKnown RBP5.64□□□□□ -1.51
HMGB1-204ENST00000399489 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-204ENST00000399489 PITPNM2Q9BZ72 1349 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 EOMESO95936 686 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 RBL2Q08999 1139 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 NKPD1Q17RQ9 610 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 TTBK2Q6IQ55 1244 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 CYFIP1Q7L576 1253 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 MFSD4AQ8N468 514 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 PMFBP1Q8TBY8 1022 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 PLPPR2Q96GM1 343 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 FAM84AQ96KN4 292 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 SETDB2Q96T68 719 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 ACBD3Q9H3P7 528 aa5.63□□□□□ -1.51
HMGB1-204ENST00000399489 LRRC10BA6NIK2 292 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 IBSPP21815 317 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-204ENST00000399489 CAP2P40123 477 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 TNNI2P48788 182 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 ANAPC15P60006 121 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 RPS26P62854 115 aaKnown RBP5.62□□□□□ -1.51
HMGB1-204ENST00000399489 WIPI1Q5MNZ9 446 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-204ENST00000399489 C22orf34Q6ZV56 151 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 UBE3DQ7Z6J8 389 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 FAM161BQ96MY7 647 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 CCDC194A0A1B0GVG4 234 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 GNA15P30679 374 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 DNAJA1P31689 397 aaKnown RBP5.62□□□□□ -1.51
HMGB1-204ENST00000399489 INPP5AQ14642 412 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 CCDC85BQ15834 202 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-204ENST00000399489 CDKAL1Q5VV42 579 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 RNF34Q969K3 372 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 PRDM7Q9NQW5 492 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 TACC3Q9Y6A5 838 aa5.62□□□□□ -1.51
HMGB1-204ENST00000399489 PEX14O75381 377 aa5.61□□□□□ -1.51
HMGB1-204ENST00000399489 PRPF40AO75400 957 aaKnown RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 SLITRK5O94991 958 aa5.61□□□□□ -1.51
HMGB1-204ENST00000399489 MAP4K4O95819 1239 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 GNL2Q13823 731 aaKnown RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 BHLHE22Q8NFJ8 381 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 ZCRB1Q8TBF4 217 aaKnown RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 HSPA12BQ96MM6 686 aa5.61□□□□□ -1.51
HMGB1-204ENST00000399489 OSBPL2Q9H1P3 480 aa5.61□□□□□ -1.51
HMGB1-204ENST00000399489 CARS2Q9HA77 564 aaKnown RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 MAGEC2Q9UBF1 373 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-204ENST00000399489 CTNND2Q9UQB3 1225 aa5.61□□□□□ -1.51
HMGB1-204ENST00000399489 FAN1Q9Y2M0 1017 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms