RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 SLC39A13Q96H72 371 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 SH3GL1Q99961 368 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 LRRFIP2Q9Y608 721 aaKnown RBP7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 CCNCP24863 283 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 AMPHP49418 695 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 RAPGEF1Q13905 1077 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 JAZF1Q86VZ6 243 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 CAPS2Q9BXY5 557 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 ABCG4Q9H172 646 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 TFIP11Q9UBB9 837 aaKnown RBP7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 PSMA3P25788 255 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 PDE4BQ07343 736 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 PTPN14Q15678 1187 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 CCDC152Q4G0S7 254 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 C9orf131Q5VYM1 1079 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 LRRC49Q8IUZ0 686 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 KRT222Q8N1A0 295 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 FAXDC2Q96IV6 333 aa7.46□□□□□ -1.22
TM9SF4-202ENST00000398022 SNUPNO95149 360 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 SNX16P57768 344 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 MYBPC3Q14896 1274 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 SPECC1Q5M775 1068 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 RC3H1Q5TC82 1133 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 DNAAF4Q8WXU2 420 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 PBXIP1Q96AQ6 731 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 VRTNQ9H8Y1 702 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 ZNF304Q9HCX3 659 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 ERLIN1O75477 346 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 VIL1P09327 827 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 RFX1P22670 979 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 CCDC183Q5T5S1 534 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 WDR66Q8TBY9 1149 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 UROC1Q96N76 676 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 TCHPQ9BT92 498 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 CHST12Q9NRB3 414 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 MIS18AQ9NYP9 233 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 STAP2Q9UGK3 403 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 ACEP12821 1306 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 NEBLO76041 1014 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 FGFR1OPO95684 399 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 TPM1P09493 284 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 KIF5BP33176 963 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 POSTNQ15063 836 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 TTC31Q49AM3 519 aaPredicted RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 ZNF449Q6P9G9 518 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 G2E3Q7L622 706 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 PTF1AQ7RTS3 328 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 WDR75Q8IWA0 830 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 CNTROBQ8N137 903 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 FAM76AQ8TAV0 307 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 RUFY2Q8WXA3 655 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 C8orf48Q96LL4 319 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 SPAG5Q96R06 1193 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 UPF3BQ9BZI7 483 aaKnown RBP7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 INTUQ9ULD6 942 aa7.45□□□□□ -1.22
TM9SF4-202ENST00000398022 NUTM2FA1L443 756 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SLC26A4O43511 780 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 HNRNPCP07910 306 aaKnown RBP eCLIP7.44□□□□□ -1.223e-8■■■■□ 24.7
TM9SF4-202ENST00000398022 INPP5BP32019 993 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 CDR1P51861 262 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TERF2Q15554 542 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SLC4A8Q2Y0W8 1093 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 ODR4Q5SWX8 454 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SEPT14Q6ZU15 432 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 ARMC9Q7Z3E5 817 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 DCLK2Q8N568 766 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 GSDMBQ8TAX9 411 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 PPCSQ9HAB8 311 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TMEM165Q9HC07 324 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TTC21AQ8NDW8 1320 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 FLT4P35916 1363 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 PTGER2P43116 358 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TSHZ3Q63HK5 1081 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 NBPF15Q8N660 670 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TEX19Q8NA77 164 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TAOK3Q9H2K8 898 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 GTF3C4Q9UKN8 822 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 CRB1P82279 1406 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 TRIM21P19474 475 aaKnown RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 NOLC1Q14978 699 aaKnown RBP eCLIP7.44□□□□□ -1.223e-6■□□□□ 8.5
TM9SF4-202ENST00000398022 BRD3Q15059 726 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 EZH2Q15910 746 aaKnown RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 MTHFSDQ2M296 383 aaKnown RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 RABL6Q3YEC7 729 aaPredicted RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SPATS2Q86XZ4 545 aaKnown RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 PARP9Q8IXQ6 854 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SENP2Q9HC62 589 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SPTLC2O15270 562 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 C21orf2O43822 256 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 SURF6O75683 361 aaKnown RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 B3GALNT1O75752 331 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 MYL1P05976 194 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 OLFML1Q6UWY5 402 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 FAM114A1Q8IWE2 563 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 DHTKD1Q96HY7 919 aaPredicted RBP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 BTG4Q9NY30 223 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 LMCD1Q9NZU5 365 aa7.44□□□□□ -1.22
TM9SF4-202ENST00000398022 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms