RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 IGSF22Q8N9C0 903 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SDR42E1Q8WUS8 393 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 RABGGTAQ92696 567 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 MTA3Q9BTC8 594 aa14.47□□□□□ -0.09
SHMT1-205ENST00000395684 ADD3Q9UEY8 706 aaKnown RBP14.47□□□□□ -0.09
SHMT1-205ENST00000395684 SOS2Q07890 1332 aaPredicted RBP14.47□□□□□ -0.09
SHMT1-205ENST00000395684 CHD4Q14839 1912 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 SLIT2O94813 1529 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 TNKSO95271 1327 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 TRIM75PA6NK02 468 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 ERVV-1B6SEH8 477 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 PRDM1O75626 825 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 RCAN1P53805 252 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 SYMPKQ92797 1274 aaKnown RBP14.46□□□□□ -0.09
SHMT1-205ENST00000395684 UBAC1Q9BSL1 405 aa14.46□□□□□ -0.09
SHMT1-205ENST00000395684 RNF26Q9BY78 433 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-205ENST00000395684 MINDY4BA8MYZ0 360 aa14.46□□□□□ -0.1
SHMT1-205ENST00000395684 NOM1Q5C9Z4 860 aaKnown RBP14.46□□□□□ -0.1
SHMT1-205ENST00000395684 CDKAL1Q5VV42 579 aa14.46□□□□□ -0.1
SHMT1-205ENST00000395684 SUSD4Q5VX71 490 aa14.46□□□□□ -0.1
SHMT1-205ENST00000395684 RNF41Q9H4P4 317 aaPredicted RBP14.46□□□□□ -0.1
SHMT1-205ENST00000395684 ZSWIM4Q9H7M6 989 aa14.46□□□□□ -0.1
SHMT1-205ENST00000395684 PODXL2Q9NZ53 605 aa14.46□□□□□ -0.1
SHMT1-205ENST00000395684 LRP5O75197 1615 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 PPP1R3GB7ZBB8 358 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 FUT2Q10981 343 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 DPYDQ12882 1025 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 GOLGA1Q92805 767 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 CCDC34Q96HJ3 373 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 PHF20Q9BVI0 1012 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 LRP2BPQ9P2M1 347 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.45□□□□□ -0.1
SHMT1-205ENST00000395684 DOCK2Q92608 1830 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 SYNRGQ9UMZ2 1314 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 FUT8Q9BYC5 575 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 ARFGAP3Q9NP61 516 aa14.45□□□□□ -0.1
SHMT1-205ENST00000395684 COBLO75128 1261 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 OAS2P29728 719 aaKnown RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 TXLNAP40222 546 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 SMC1AQ14683 1233 aaKnown RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 CT47A1Q5JQC4 288 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 PPFIBP1Q86W92 1011 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 STAMQ92783 540 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 IQSEC3Q9UPP2 1182 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 V9GY48 417 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 CASP14P31944 242 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 KRT2P35908 639 aa14.44□□□□□ -0.1
SHMT1-205ENST00000395684 AKAP17AQ02040 695 aaKnown RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 ENAHQ8N8S7 591 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 NAA15Q9BXJ9 866 aaKnown RBP14.44□□□□□ -0.1
SHMT1-205ENST00000395684 ARAP2Q8WZ64 1704 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 MFAP3LO75121 409 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 PLEKHA8P1O95397 391 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 CYP7A1P22680 504 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 IL6STP40189 918 aaPredicted RBP14.43□□□□□ -0.1
SHMT1-205ENST00000395684 FXR1P51114 621 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHMT1-205ENST00000395684 ST5P78524 1137 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 ZNF174Q15697 407 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 ESR2Q92731 530 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 GSDMAQ96QA5 445 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 NUP98P52948 1817 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 BCL9O00512 1426 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 ANKRD36CQ5JPF3 1778 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 GYPCP04921 128 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 NPY5RQ15761 445 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 RASGRP2Q7LDG7 609 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 AK7Q96M32 723 aa14.43□□□□□ -0.1
SHMT1-205ENST00000395684 PRPF3O43395 683 aaKnown RBP14.42□□□□□ -0.1
SHMT1-205ENST00000395684 ABL1P00519 1130 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 XBP1P17861 261 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 CHMP4BP1P59074 171 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 SRGAP1Q7Z6B7 1085 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 ZSCAN10Q96SZ4 725 aaPredicted RBP14.42□□□□□ -0.1
SHMT1-205ENST00000395684 PUF60Q9UHX1 559 aaKnown RBP14.42□□□□□ -0.1
SHMT1-205ENST00000395684 ANAPC4Q9UJX5 808 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 BCORQ6W2J9 1755 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 ZNF335Q9H4Z2 1342 aaPredicted RBP14.42□□□□□ -0.1
SHMT1-205ENST00000395684 CYP2D7A0A087X1C5 515 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 HNRNPH2P55795 449 aaKnown RBP14.42□□□□□ -0.1
SHMT1-205ENST00000395684 PPP2R5BQ15173 497 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 LONRF2Q1L5Z9 754 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 TNFRSF25Q93038 417 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 FERMT2Q96AC1 680 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 CTAGE1Q96RT6 745 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 ANKZF1Q9H8Y5 726 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 CALCOCO1Q9P1Z2 691 aa14.42□□□□□ -0.1
SHMT1-205ENST00000395684 CCDC151A5D8V7 595 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 RNF225M0QZC1 329 aaPredicted RBP14.41□□□□□ -0.1
SHMT1-205ENST00000395684 KIF5CO60282 957 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 TFRCP02786 760 aaKnown RBP14.41□□□□□ -0.1
SHMT1-205ENST00000395684 CCT6AP40227 531 aaKnown RBP14.41□□□□□ -0.1
SHMT1-205ENST00000395684 ZNF569Q5MCW4 686 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 NEK11Q8NG66 645 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 ABCF2Q9UG63 623 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 CDC23Q9UJX2 597 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 RTL9Q8NET4 1388 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 XDHP47989 1333 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 SEMA3EO15041 775 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 TROAPQ12815 778 aa14.41□□□□□ -0.1
SHMT1-205ENST00000395684 PTGDRQ13258 359 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms