RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SUSD3Q96L08 255 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 ACBD3Q9H3P7 528 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 ZDHHC3Q9NYG2 299 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 KANSL3Q9P2N6 904 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 PHF24Q9UPV7 400 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 ZDHHC9Q9Y397 364 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 RLFQ13129 1914 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 ATRNO75882 1429 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 WDR90Q96KV7 1748 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 USP34Q70CQ2 3546 aa2.93□□□□□ -1.94
VPS54-202ENST00000354504 EIF1AYO14602 144 aaKnown RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 U2SURPO15042 1029 aaKnown RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 EAPPQ56P03 285 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 PEAR1Q5VY43 1037 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 LYSMD3Q7Z3D4 306 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 CHD1LQ86WJ1 897 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 ANKRD24Q8TF21 1146 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 NPHS2Q9NP85 383 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 GDF2Q9UK05 429 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 DDX19BQ9UMR2 479 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 MED23Q9ULK4 1368 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 DNAH12Q6ZR08 3092 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 METTL12A8MUP2 240 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 EREGO14944 169 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 NBPF7P0C2Y1 421 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 ARAFP10398 606 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 INPP5BP32019 993 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 FOXO4P98177 505 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 NT5DC4Q86YG4 428 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 GPR161Q8N6U8 529 aaKnown RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 BEND7Q8N7W2 519 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 ABTB2Q8N961 1025 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 SLC52A2Q9HAB3 445 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 ZFATQ9P243 1243 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 HTTP42858 3142 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 RPAP1Q9BWH6 1393 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 DICER1Q9UPY3 1922 aaKnown RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 TNFRSF21O75509 655 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 SASH1O94885 1247 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 FAM13AO94988 1023 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 GDF11O95390 407 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 CELA2BP08218 269 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 XPCQ01831 940 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 ENOX2Q16206 610 aaKnown RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 RTN1Q16799 776 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 TTC22Q5TAA0 569 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 AMIGO3Q86WK7 504 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 C1orf127Q8N9H9 656 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 FRMD6Q96NE9 622 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 POLMQ9NP87 494 aaPredicted RBP2.92□□□□□ -1.94
VPS54-202ENST00000354504 SMC4Q9NTJ3 1288 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 A0A0G2JMZ2 1700 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 LRRC37A2A6NM11 1700 aa2.92□□□□□ -1.94
VPS54-202ENST00000354504 MICAL2O94851 1124 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 TARSP26639 723 aaKnown RBP2.91□□□□□ -1.94
VPS54-202ENST00000354504 IDH3AP50213 366 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 MAP3K10Q02779 954 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 TAF7Q15545 349 aaPredicted RBP2.91□□□□□ -1.94
VPS54-202ENST00000354504 LARP7Q4G0J3 582 aaKnown RBP eCLIP2.91□□□□□ -1.94
VPS54-202ENST00000354504 XKR5Q6UX68 686 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 KCNH5Q8NCM2 988 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 SNX21Q969T3 373 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 USP26Q9BXU7 913 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 BRPF3Q9ULD4 1205 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 MAPK8IP3Q9UPT6 1336 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 SBF1O95248 1867 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 DAB2P98082 770 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 ATP8B2P98198 1209 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 CALD1Q05682 793 aaKnown RBP2.91□□□□□ -1.94
VPS54-202ENST00000354504 TYRO3Q06418 890 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 C11orf91Q3C1V1 193 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 TMEM214Q6NUQ4 689 aaKnown RBP2.91□□□□□ -1.94
VPS54-202ENST00000354504 KRT25Q7Z3Z0 450 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 VGLL2Q8N8G2 317 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 RHBDD1Q8TEB9 315 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 TTC14Q96N46 770 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 ZIC5Q96T25 663 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 CHPF2Q9P2E5 772 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 MYH4Q9Y623 1939 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 SLC27A3Q5K4L6 730 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 RASIP1Q5U651 963 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 IER5Q5VY09 327 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 NXPE4Q6UWF7 544 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 ATG9AQ7Z3C6 839 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 BTLAQ7Z6A9 289 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 TAF6LQ9Y6J9 622 aa2.91□□□□□ -1.94
VPS54-202ENST00000354504 AOX1Q06278 1338 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 DCDC2BA2VCK2 349 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 OIP5O43482 229 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 MAN1A2O60476 641 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 CHGBP05060 677 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 ALKBH2Q6NS38 261 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 GLIS3Q8NEA6 775 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 GCC1Q96CN9 775 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 CNTNAP3BQ96NU0 1288 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 TINF2Q9BSI4 451 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 CNTNAP3Q9BZ76 1288 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 RTCBQ9Y3I0 505 aaKnown RBP2.9□□□□□ -1.94
VPS54-202ENST00000354504 TACC3Q9Y6A5 838 aa2.9□□□□□ -1.94
VPS54-202ENST00000354504 NEDD4P46934 1319 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms