RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 SNRPA1P09661 255 aaKnown RBP9.9□□□□□ -0.82
VAPB-201ENST00000265619 MYBL1P10243 752 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 ARHGAP25P42331 645 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 GUCY1A3Q02108 690 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 SF3B2Q13435 895 aaKnown RBP9.9□□□□□ -0.82
VAPB-201ENST00000265619 KCNB1Q14721 858 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 SMIM5Q71RC9 77 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 HDAC7Q8WUI4 952 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 PCDH11XQ9BZA7 1347 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 PCDH11YQ9BZA8 1340 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 CBFA2T2O43439 604 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 CDC25AP30304 524 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 ADCY2Q08462 1091 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 SF3A1Q15459 793 aaKnown RBP9.9□□□□□ -0.83
VAPB-201ENST00000265619 CC2D2BQ6DHV5 1058 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 NAA16Q6N069 864 aaPredicted RBP9.9□□□□□ -0.83
VAPB-201ENST00000265619 METTL16Q86W50 562 aaKnown RBP9.9□□□□□ -0.83
VAPB-201ENST00000265619 VCPKMTQ9H867 229 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 ECHDC1Q9NTX5 307 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 HAUS2Q9NVX0 235 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 RPS6KL1Q9Y6S9 549 aa9.9□□□□□ -0.83
VAPB-201ENST00000265619 USP42Q9H9J4 1324 aaKnown RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 ZNF185O15231 689 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 COBLO75128 1261 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 HDLBPQ00341 1268 aaKnown RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 TTLL7Q6ZT98 887 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 FMNL3Q8IVF7 1028 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 TSEN2Q8NCE0 465 aaKnown RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 CCDC26Q8TAB7 109 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 ALDH8A1Q9H2A2 487 aaPredicted RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 SEC31BQ9NQW1 1179 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 TUBE1Q9UJT0 475 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 CAMTA1Q9Y6Y1 1673 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 LAMA4Q16363 1823 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 A0A1W2PQ27 194 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 A0A1W2PQ64 194 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 A0A1W2PQD8 194 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 PDE2AO00408 941 aaPredicted RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 TAF5LO75529 589 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 CYP21A2P08686 494 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 IFT88Q13099 833 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 SPECC1Q5M775 1068 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 DNAJC10Q8IXB1 793 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 SPDL1Q96EA4 605 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 ZNF396Q96N95 335 aaPredicted RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 NEK1Q96PY6 1258 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 GBP3Q9H0R5 595 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 MYO6Q9UM54 1294 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 RGPD1P0DJD0 1748 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 EIF4E1BA6NMX2 242 aaKnown RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 DNM1LO00429 736 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 SPTLC2O15270 562 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 SMTNP53814 917 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 THEMIS2Q5TEJ8 643 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 NAA35Q5VZE5 725 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 NAPGQ99747 312 aaPredicted RBP9.89□□□□□ -0.83
VAPB-201ENST00000265619 DCCP43146 1447 aa9.89□□□□□ -0.83
VAPB-201ENST00000265619 CEMIPQ8WUJ3 1361 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 GOLGA6BA6NDN3 693 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 KDM6AO15550 1401 aaPredicted RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 NAP1L1P55209 391 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 ERVK-24P63145 666 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 CDCA2Q69YH5 1023 aaPredicted RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 ANKRD13DQ6ZTN6 518 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 AACSQ86V21 672 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 ANKRD18AQ8IVF6 992 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 RBM28Q9NW13 759 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 PCDHA5Q9Y5H7 936 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 MED23Q9ULK4 1368 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 BACH1O14867 736 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 ATP1A1P05023 1023 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 SHC4Q6S5L8 630 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 GRAMD1CQ8IYS0 662 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 SPDYE1Q8NFV5 336 aaPredicted RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 LMBR1Q8WVP7 490 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 CRACR2AQ9BSW2 395 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 NFE2L3Q9Y4A8 694 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 GOLGB1Q14789 3259 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 SALL1Q9NSC2 1324 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 KIF1AQ12756 1690 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 A0A087WZG4 1122 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 KIAA0754O94854 1291 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 ERCC3P19447 782 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 FXR1P51114 621 aaKnown RBP eCLIP9.88□□□□□ -0.83
VAPB-201ENST00000265619 DDB1Q16531 1140 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 AP1ARQ63HQ0 302 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 CYB5D1Q6P9G0 228 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 KSR2Q6VAB6 950 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 PARP9Q8IXQ6 854 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 STK11IPQ8N1F8 1099 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 EVI5LQ96CN4 794 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 TBC1D31Q96DN5 1066 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 RNPC3Q96LT9 517 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 TACO1Q9BSH4 297 aaKnown RBP9.88□□□□□ -0.83
VAPB-201ENST00000265619 TBC1D2BQ9UPU7 963 aa9.88□□□□□ -0.83
VAPB-201ENST00000265619 ZNF18P17022 549 aa9.87□□□□□ -0.83
VAPB-201ENST00000265619 KCTD19Q17RG1 926 aaPredicted RBP9.87□□□□□ -0.83
VAPB-201ENST00000265619 CHADLQ6NUI6 762 aa9.87□□□□□ -0.83
VAPB-201ENST00000265619 RASGRP2Q7LDG7 609 aa9.87□□□□□ -0.83
VAPB-201ENST00000265619 FUKQ8N0W3 1084 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms