RNA–Protein interactions for RNA: ENSMUST00000187758.6

Usp40-204, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp40, Length 3,977 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-204ENSMUST00000187758 Lce1lQ9D1G7 135 aa2.47□□□□□ -2.01
Usp40-204ENSMUST00000187758 Gm11938Q9D3H4 131 aa2.47□□□□□ -2.01
Usp40-204ENSMUST00000187758 Lce1dQ9D731 133 aa2.46□□□□□ -2.02
Usp40-204ENSMUST00000187758 Sprr2gO70558 76 aa2.44□□□□□ -2.02
Usp40-204ENSMUST00000187758 A0A1Y7VJH8 109 aa2.44□□□□□ -2.02
Usp40-204ENSMUST00000187758 Syne1Q6ZWR6 8799 aa2.43□□□□□ -2.02
Usp40-204ENSMUST00000187758 Sprr2iO70560 76 aa2.42□□□□□ -2.02
Usp40-204ENSMUST00000187758 Sprr2dO70555 85 aa2.39□□□□□ -2.03
Usp40-204ENSMUST00000187758 Krtap31-1Q9D644 177 aa2.39□□□□□ -2.03
Usp40-204ENSMUST00000187758 Krtap28-10A0A1Y7VP58 119 aa2.38□□□□□ -2.03
Usp40-204ENSMUST00000187758 Lce1kJ3QP15 125 aa2.38□□□□□ -2.03
Usp40-204ENSMUST00000187758 Lce3cQ91V05 98 aa2.35□□□□□ -2.03
Usp40-204ENSMUST00000187758 Krtap19-4Q925H7 84 aa2.34□□□□□ -2.03
Usp40-204ENSMUST00000187758 Lce1fB9EJP6 147 aa2.34□□□□□ -2.03
Usp40-204ENSMUST00000187758 Krtap20-2E9Q0A8 60 aa2.34□□□□□ -2.03
Usp40-204ENSMUST00000187758 Lce1cQ9D1C5 147 aa2.34□□□□□ -2.03
Usp40-204ENSMUST00000187758 A0A1Y7VLE6 161 aa2.33□□□□□ -2.04
Usp40-204ENSMUST00000187758 Krtap31-2Q8CAY5 177 aa2.33□□□□□ -2.04
Usp40-204ENSMUST00000187758 Lce1eQ9D139 143 aa2.32□□□□□ -2.04
Usp40-204ENSMUST00000187758 Gm10100J3QK64 120 aa2.32□□□□□ -2.04
Usp40-204ENSMUST00000187758 Lce3dE9Q8V1 98 aa2.31□□□□□ -2.04
Usp40-204ENSMUST00000187758 Krtap28-13A0A087WQP5 138 aa2.3□□□□□ -2.04
Usp40-204ENSMUST00000187758 Lce1a1Q9CQH5 143 aa2.3□□□□□ -2.04
Usp40-204ENSMUST00000187758 Lce3eF8VQJ0 98 aa2.3□□□□□ -2.04
Usp40-204ENSMUST00000187758 Lce3fQ6PAI4 98 aa2.3□□□□□ -2.04
Usp40-204ENSMUST00000187758 Krtap5-2Q9D5Z7 189 aa2.28□□□□□ -2.04
Usp40-204ENSMUST00000187758 Gm10142J3KMP7 120 aa2.27□□□□□ -2.05
Usp40-204ENSMUST00000187758 Mt1P02802 61 aaKnown RBP2.27□□□□□ -2.05
Usp40-204ENSMUST00000187758 Gm11568A2A4M2 211 aa2.26□□□□□ -2.05
Usp40-204ENSMUST00000187758 Krtap9-1Q64526 186 aa2.26□□□□□ -2.05
Usp40-204ENSMUST00000187758 Muc16A0A140LJ72 8478 aa2.24□□□□□ -2.05
Usp40-204ENSMUST00000187758 A030005K14RikA0A1Y7VNY1 122 aa2.22□□□□□ -2.05
Usp40-204ENSMUST00000187758 A030005L19RikA0A1Y7VIU2 113 aa2.21□□□□□ -2.06
Usp40-204ENSMUST00000187758 Lce3aQ497I5 98 aa2.2□□□□□ -2.06
Usp40-204ENSMUST00000187758 ObscnA2AAJ9 8891 aaKnown RBP2.19□□□□□ -2.06
Usp40-204ENSMUST00000187758 Sprr2fO70557 76 aa2.18□□□□□ -2.06
Usp40-204ENSMUST00000187758 Gm7544A0A1Y7VJ58 118 aa2.17□□□□□ -2.06
Usp40-204ENSMUST00000187758 Gm11559Q9D3H7 191 aa2.16□□□□□ -2.06
Usp40-204ENSMUST00000187758 Macf1Q9QXZ0 7354 aaKnown RBP2.14□□□□□ -2.07
Usp40-204ENSMUST00000187758 Gm4553A0A1B0GSA9 284 aa2.13□□□□□ -2.07
Usp40-204ENSMUST00000187758 Gm11554B1AQB2 190 aa2.13□□□□□ -2.07
Usp40-204ENSMUST00000187758 A0A1Y7VJ07 166 aa2.11□□□□□ -2.07
Usp40-204ENSMUST00000187758 Gm10153A0A1B0GRL1 320 aa2.11□□□□□ -2.07
Usp40-204ENSMUST00000187758 Sprr2eO70556 76 aa2.1□□□□□ -2.07
Usp40-204ENSMUST00000187758 Mt3P28184 68 aa2.08□□□□□ -2.08
Usp40-204ENSMUST00000187758 A030003K21RikA0A1Y7VIM3 128 aa2.08□□□□□ -2.08
Usp40-204ENSMUST00000187758 Sprr2hO70559 108 aa2.08□□□□□ -2.08
Usp40-204ENSMUST00000187758 Gm45337A0A1B0GS71 263 aa2.08□□□□□ -2.08
Usp40-204ENSMUST00000187758 Gm2431E9Q8S1 172 aa2.06□□□□□ -2.08
Usp40-204ENSMUST00000187758 Kmt2dQ6PDK2 5588 aa2.04□□□□□ -2.08
Usp40-204ENSMUST00000187758 Gpr98Q8VHN7 6298 aaKnown RBP2.04□□□□□ -2.08
Usp40-204ENSMUST00000187758 Hmcn1D3YXG0 5634 aa2.02□□□□□ -2.09
Usp40-204ENSMUST00000187758 Gm40460A0A1B0GR10 244 aa2.02□□□□□ -2.09
Usp40-204ENSMUST00000187758 Gm7579A0A1B0GRJ4 243 aa2.02□□□□□ -2.09
Usp40-204ENSMUST00000187758 Krtap5-5Q2TA51 241 aa2.02□□□□□ -2.09
Usp40-204ENSMUST00000187758 Krtap5-4Q62220 223 aa2.02□□□□□ -2.09
Usp40-204ENSMUST00000187758 Eppk1Q8R0W0 6548 aa2.01□□□□□ -2.09
Usp40-204ENSMUST00000187758 A030014E15RikA0A1Y7VJV2 120 aa1.99□□□□□ -2.09
Usp40-204ENSMUST00000187758 Krtap4-16Q91W93 202 aa1.98□□□□□ -2.09
Usp40-204ENSMUST00000187758 Gm6217A0A1Y7VJK9 128 aa1.95□□□□□ -2.1
Usp40-204ENSMUST00000187758 DstQ91ZU6 7393 aaKnown RBP1.93□□□□□ -2.1
Usp40-204ENSMUST00000187758 Gm39115A0A1B0GSH7 232 aa1.91□□□□□ -2.1
Usp40-204ENSMUST00000187758 Gm10024A0A0A0MQA4 119 aa1.88□□□□□ -2.11
Usp40-204ENSMUST00000187758 Gm11639A0A1D5RLM8 5808 aa1.86□□□□□ -2.11
Usp40-204ENSMUST00000187758 Muc19Q6PZE0 7524 aa1.84□□□□□ -2.12
Usp40-204ENSMUST00000187758 NebE9Q1W3 7152 aa1.83□□□□□ -2.12
Usp40-204ENSMUST00000187758 AhnakE9Q616 5656 aaKnown RBP1.75□□□□□ -2.13
Usp40-204ENSMUST00000187758 A0A286YCP9 139 aa1.73□□□□□ -2.13
Usp40-204ENSMUST00000187758 1110025L11RikO09048 78 aa1.7□□□□□ -2.14
Usp40-204ENSMUST00000187758 Krtap6-5Q925H3 78 aa1.7□□□□□ -2.14
Usp40-204ENSMUST00000187758 Gm45618A0A1B0GSA0 219 aa1.7□□□□□ -2.14
Usp40-204ENSMUST00000187758 Gm10229O08631 77 aa1.52□□□□□ -2.17
Usp40-204ENSMUST00000187758 Gm29735A0A1B0GT06 219 aa1.5□□□□□ -2.17
Usp40-204ENSMUST00000187758 Gm11567Q9D141 195 aa1.48□□□□□ -2.17
Usp40-204ENSMUST00000187758 Sprr2bO70554 98 aa1.48□□□□□ -2.17
Usp40-204ENSMUST00000187758 Krtap21-1Q925H4 128 aa1.38□□□□□ -2.19
Usp40-204ENSMUST00000187758 Krtap6-2O08884 159 aa1.31□□□□□ -2.2
Usp40-204ENSMUST00000187758 Phgr1Q8K0G7 91 aa1.26□□□□□ -2.21
Usp40-204ENSMUST00000187758 Krtap5-1Q64507 230 aa1.02□□□□□ -2.25
Usp40-204ENSMUST00000187758 Gm4559A4IF42 199 aa0.87□□□□□ -2.27
Retrieved 80 of 22,080 RNA–protein pairs in 125.9 ms