RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Sprr2kO70562 68 aa3.3□□□□□ -1.88
Trim39-205ENSMUST00000173369 Tnp1P10856 55 aa3.27□□□□□ -1.89
Trim39-205ENSMUST00000173369 Krtap28-10A0A1Y7VP58 119 aa3.26□□□□□ -1.89
Trim39-205ENSMUST00000173369 2300003K06RikA2A4M0 262 aa3.25□□□□□ -1.89
Trim39-205ENSMUST00000173369 Krtap19-9bQ99NG9 58 aa3.21□□□□□ -1.9
Trim39-205ENSMUST00000173369 Gm7544A0A1Y7VJ58 118 aa3.21□□□□□ -1.9
Trim39-205ENSMUST00000173369 Krtap6-3A0A087WQL6 57 aa3.13□□□□□ -1.91
Trim39-205ENSMUST00000173369 Lce1dQ9D731 133 aa3.12□□□□□ -1.91
Trim39-205ENSMUST00000173369 2310046K23RikA0A0A6YVW6 87 aa3.11□□□□□ -1.91
Trim39-205ENSMUST00000173369 A030005L19RikA0A1Y7VIU2 113 aa3.1□□□□□ -1.91
Trim39-205ENSMUST00000173369 A0A1Y7VJ07 166 aa3.07□□□□□ -1.92
Trim39-205ENSMUST00000173369 A030005K14RikA0A1Y7VNY1 122 aa3.06□□□□□ -1.92
Trim39-205ENSMUST00000173369 Sprr2gO70558 76 aa3.04□□□□□ -1.92
Trim39-205ENSMUST00000173369 Syne1Q6ZWR6 8799 aa3.03□□□□□ -1.92
Trim39-205ENSMUST00000173369 Macf1Q9QXZ0 7354 aaKnown RBP3.02□□□□□ -1.93
Trim39-205ENSMUST00000173369 Krtap28-13A0A087WQP5 138 aa3.02□□□□□ -1.93
Trim39-205ENSMUST00000173369 4933428G20RikQ9D3X4 101 aa3.02□□□□□ -1.93
Trim39-205ENSMUST00000173369 Gm10142J3KMP7 120 aa2.99□□□□□ -1.93
Trim39-205ENSMUST00000173369 Gm10272F7CZ33 110 aa2.98□□□□□ -1.93
Trim39-205ENSMUST00000173369 A030014E15RikA0A1Y7VJV2 120 aa2.97□□□□□ -1.93
Trim39-205ENSMUST00000173369 A0A286YCP9 139 aa2.96□□□□□ -1.94
Trim39-205ENSMUST00000173369 Krtap20-2E9Q0A8 60 aa2.96□□□□□ -1.94
Trim39-205ENSMUST00000173369 Lce1kJ3QP15 125 aa2.91□□□□□ -1.94
Trim39-205ENSMUST00000173369 Lce3bQ9CQM7 98 aa2.89□□□□□ -1.95
Trim39-205ENSMUST00000173369 Krtap9-1Q64526 186 aa2.88□□□□□ -1.95
Trim39-205ENSMUST00000173369 Sprr2iO70560 76 aa2.85□□□□□ -1.95
Trim39-205ENSMUST00000173369 A030003K21RikA0A1Y7VIM3 128 aa2.8□□□□□ -1.96
Trim39-205ENSMUST00000173369 Gm11554B1AQB2 190 aa2.8□□□□□ -1.96
Trim39-205ENSMUST00000173369 Gm6217A0A1Y7VJK9 128 aa2.78□□□□□ -1.96
Trim39-205ENSMUST00000173369 Lce1fB9EJP6 147 aa2.76□□□□□ -1.97
Trim39-205ENSMUST00000173369 Lce1cQ9D1C5 147 aa2.76□□□□□ -1.97
Trim39-205ENSMUST00000173369 Gm11568A2A4M2 211 aa2.75□□□□□ -1.97
Trim39-205ENSMUST00000173369 Krtap5-2Q9D5Z7 189 aa2.74□□□□□ -1.97
Trim39-205ENSMUST00000173369 Mt3P28184 68 aa2.72□□□□□ -1.97
Trim39-205ENSMUST00000173369 Gm11938Q9D3H4 131 aa2.7□□□□□ -1.98
Trim39-205ENSMUST00000173369 Muc19Q6PZE0 7524 aa2.68□□□□□ -1.98
Trim39-205ENSMUST00000173369 Kmt2dQ6PDK2 5588 aa2.68□□□□□ -1.98
Trim39-205ENSMUST00000173369 Hmcn1D3YXG0 5634 aa2.67□□□□□ -1.98
Trim39-205ENSMUST00000173369 Eppk1Q8R0W0 6548 aa2.65□□□□□ -1.99
Trim39-205ENSMUST00000173369 Lce3cQ91V05 98 aa2.65□□□□□ -1.99
Trim39-205ENSMUST00000173369 Sprr2fO70557 76 aa2.64□□□□□ -1.99
Trim39-205ENSMUST00000173369 Sprr2dO70555 85 aa2.61□□□□□ -1.99
Trim39-205ENSMUST00000173369 Mt1P02802 61 aaKnown RBP2.6□□□□□ -1.99
Trim39-205ENSMUST00000173369 Gm4553A0A1B0GSA9 284 aa2.59□□□□□ -1.99
Trim39-205ENSMUST00000173369 Gm11639A0A1D5RLM8 5808 aa2.59□□□□□ -1.99
Trim39-205ENSMUST00000173369 ObscnA2AAJ9 8891 aaKnown RBP2.58□□□□□ -2
Trim39-205ENSMUST00000173369 Krtap19-4Q925H7 84 aa2.57□□□□□ -2
Trim39-205ENSMUST00000173369 Gm2431E9Q8S1 172 aa2.56□□□□□ -2
Trim39-205ENSMUST00000173369 NebE9Q1W3 7152 aa2.56□□□□□ -2
Trim39-205ENSMUST00000173369 Lce3dE9Q8V1 98 aa2.55□□□□□ -2
Trim39-205ENSMUST00000173369 Lce3eF8VQJ0 98 aa2.55□□□□□ -2
Trim39-205ENSMUST00000173369 Lce3fQ6PAI4 98 aa2.55□□□□□ -2
Trim39-205ENSMUST00000173369 DstQ91ZU6 7393 aaKnown RBP2.54□□□□□ -2
Trim39-205ENSMUST00000173369 Gm10153A0A1B0GRL1 320 aa2.5□□□□□ -2.01
Trim39-205ENSMUST00000173369 Gm45337A0A1B0GS71 263 aa2.47□□□□□ -2.01
Trim39-205ENSMUST00000173369 Sprr2eO70556 76 aa2.47□□□□□ -2.01
Trim39-205ENSMUST00000173369 Gm10024A0A0A0MQA4 119 aa2.45□□□□□ -2.02
Trim39-205ENSMUST00000173369 Lce3aQ497I5 98 aa2.42□□□□□ -2.02
Trim39-205ENSMUST00000173369 Muc16A0A140LJ72 8478 aa2.41□□□□□ -2.02
Trim39-205ENSMUST00000173369 Gpr98Q8VHN7 6298 aaKnown RBP2.38□□□□□ -2.03
Trim39-205ENSMUST00000173369 Gm40460A0A1B0GR10 244 aa2.36□□□□□ -2.03
Trim39-205ENSMUST00000173369 Gm7579A0A1B0GRJ4 243 aa2.36□□□□□ -2.03
Trim39-205ENSMUST00000173369 Krtap5-5Q2TA51 241 aa2.36□□□□□ -2.03
Trim39-205ENSMUST00000173369 Krtap5-4Q62220 223 aa2.36□□□□□ -2.03
Trim39-205ENSMUST00000173369 Krtap4-16Q91W93 202 aa2.32□□□□□ -2.04
Trim39-205ENSMUST00000173369 Gm39115A0A1B0GSH7 232 aa2.31□□□□□ -2.04
Trim39-205ENSMUST00000173369 Sprr2hO70559 108 aa2.31□□□□□ -2.04
Trim39-205ENSMUST00000173369 Gm11567Q9D141 195 aa2.24□□□□□ -2.05
Trim39-205ENSMUST00000173369 AhnakE9Q616 5656 aaKnown RBP2.19□□□□□ -2.06
Trim39-205ENSMUST00000173369 Gm45618A0A1B0GSA0 219 aa2.1□□□□□ -2.07
Trim39-205ENSMUST00000173369 Gm29735A0A1B0GT06 219 aa1.93□□□□□ -2.1
Trim39-205ENSMUST00000173369 1110025L11RikO09048 78 aa1.87□□□□□ -2.11
Trim39-205ENSMUST00000173369 Krtap6-5Q925H3 78 aa1.87□□□□□ -2.11
Trim39-205ENSMUST00000173369 Gm10229O08631 77 aa1.69□□□□□ -2.14
Trim39-205ENSMUST00000173369 Gm4559A4IF42 199 aa1.65□□□□□ -2.15
Trim39-205ENSMUST00000173369 Sprr2bO70554 98 aa1.55□□□□□ -2.16
Trim39-205ENSMUST00000173369 Krtap21-1Q925H4 128 aa1.51□□□□□ -2.17
Trim39-205ENSMUST00000173369 Krtap6-2O08884 159 aa1.5□□□□□ -2.17
Trim39-205ENSMUST00000173369 Krtap5-1Q64507 230 aa1.44□□□□□ -2.18
Trim39-205ENSMUST00000173369 Phgr1Q8K0G7 91 aa1.37□□□□□ -2.19
Retrieved 80 of 22,080 RNA–protein pairs in 86.5 ms