RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Ubr4A2AN08 5180 aa6.18□□□□□ -1.42
Sh3rf1-201ENSMUST00000034060 4932415D10RikA0A1W2P6U8 4986 aa6.15□□□□□ -1.43
Sh3rf1-201ENSMUST00000034060 2300003K06RikA2A4M0 262 aa6.14□□□□□ -1.43
Sh3rf1-201ENSMUST00000034060 Lce1kJ3QP15 125 aa6.14□□□□□ -1.43
Sh3rf1-201ENSMUST00000034060 Krtap4-1Q3UUY3 169 aa6.13□□□□□ -1.43
Sh3rf1-201ENSMUST00000034060 Mt1P02802 61 aaKnown RBP6.08□□□□□ -1.44
Sh3rf1-201ENSMUST00000034060 ZanO88799 5376 aa6.06□□□□□ -1.44
Sh3rf1-201ENSMUST00000034060 Krtap4-7Q9D732 168 aa6.05□□□□□ -1.44
Sh3rf1-201ENSMUST00000034060 Fat4Q2PZL6 4981 aa6.04□□□□□ -1.44
Sh3rf1-201ENSMUST00000034060 Krtap17-1A2A5X6 109 aa6.03□□□□□ -1.44
Sh3rf1-201ENSMUST00000034060 Mdn1A2ANY6 5589 aaKnown RBP6.02□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Muc5bE9Q5I3 4800 aa6.01□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Gm11564A2A4L9 201 aa6.01□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Gm11563B1AQ90 168 aa6.01□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Gm11595B1AQA7 289 aa6.01□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Krtap4-8B1AQA8 209 aa6.01□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Krtap31-2Q8CAY5 177 aa6□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Gm11596B1AQB0 205 aa5.97□□□□□ -1.45
Sh3rf1-201ENSMUST00000034060 Krtap4-9B1AQA9 244 aa5.95□□□□□ -1.46
Sh3rf1-201ENSMUST00000034060 Sprr2bO70554 98 aa5.85□□□□□ -1.47
Sh3rf1-201ENSMUST00000034060 Abca13Q5SSE9 5034 aa5.82□□□□□ -1.48
Sh3rf1-201ENSMUST00000034060 Lce1a1Q9CQH5 143 aa5.82□□□□□ -1.48
Sh3rf1-201ENSMUST00000034060 Rnf213E9Q555 5152 aaKnown RBP5.82□□□□□ -1.48
Sh3rf1-201ENSMUST00000034060 Krtap4-13Q9D7P3 165 aa5.78□□□□□ -1.48
Sh3rf1-201ENSMUST00000034060 SspoQ8CG65 4998 aa5.52□□□□□ -1.53
Sh3rf1-201ENSMUST00000034060 Krtap6-3A0A087WQL6 57 aa5.43□□□□□ -1.54
Sh3rf1-201ENSMUST00000034060 ObscnA2AAJ9 8891 aaKnown RBP5.37□□□□□ -1.55
Sh3rf1-201ENSMUST00000034060 Ush2AQ2QI47 5193 aa5.29□□□□□ -1.56
Sh3rf1-201ENSMUST00000034060 Syne2Q6ZWQ0 6874 aaKnown RBP5.25□□□□□ -1.57
Sh3rf1-201ENSMUST00000034060 Gm11554B1AQB2 190 aa5.2□□□□□ -1.58
Sh3rf1-201ENSMUST00000034060 Fsip2A2ARZ3 6995 aa5.19□□□□□ -1.58
Sh3rf1-201ENSMUST00000034060 Muc16A0A140LJ72 8478 aa5.14□□□□□ -1.59
Sh3rf1-201ENSMUST00000034060 Krtap20-2E9Q0A8 60 aa5.14□□□□□ -1.59
Sh3rf1-201ENSMUST00000034060 1110025L11RikO09048 78 aa4.87□□□□□ -1.63
Sh3rf1-201ENSMUST00000034060 Krtap6-5Q925H3 78 aa4.87□□□□□ -1.63
Sh3rf1-201ENSMUST00000034060 Eppk1Q8R0W0 6548 aa4.62□□□□□ -1.67
Sh3rf1-201ENSMUST00000034060 Gm10229O08631 77 aa4.61□□□□□ -1.67
Sh3rf1-201ENSMUST00000034060 Kmt2dQ6PDK2 5588 aa4.57□□□□□ -1.68
Sh3rf1-201ENSMUST00000034060 Macf1Q9QXZ0 7354 aaKnown RBP4.46□□□□□ -1.69
Sh3rf1-201ENSMUST00000034060 Phgr1Q8K0G7 91 aa4.43□□□□□ -1.7
Sh3rf1-201ENSMUST00000034060 Gm11555B1AQ89 175 aa4.42□□□□□ -1.7
Sh3rf1-201ENSMUST00000034060 DstQ91ZU6 7393 aaKnown RBP4.33□□□□□ -1.72
Sh3rf1-201ENSMUST00000034060 Gm11568A2A4M2 211 aa4.16□□□□□ -1.74
Sh3rf1-201ENSMUST00000034060 Krtap9-1Q64526 186 aa4.16□□□□□ -1.74
Sh3rf1-201ENSMUST00000034060 Gm11559Q9D3H7 191 aa4.11□□□□□ -1.75
Sh3rf1-201ENSMUST00000034060 NebE9Q1W3 7152 aa4.03□□□□□ -1.76
Sh3rf1-201ENSMUST00000034060 Muc19Q6PZE0 7524 aa3.91□□□□□ -1.78
Sh3rf1-201ENSMUST00000034060 Gm11639A0A1D5RLM8 5808 aa3.8□□□□□ -1.8
Sh3rf1-201ENSMUST00000034060 A0A1Y7VLE6 161 aa3.73□□□□□ -1.81
Sh3rf1-201ENSMUST00000034060 Krtap5-2Q9D5Z7 189 aa3.71□□□□□ -1.82
Sh3rf1-201ENSMUST00000034060 Krtap6-2O08884 159 aa3.63□□□□□ -1.83
Sh3rf1-201ENSMUST00000034060 Gm11567Q9D141 195 aa3.52□□□□□ -1.85
Sh3rf1-201ENSMUST00000034060 Gpr98Q8VHN7 6298 aaKnown RBP3.51□□□□□ -1.85
Sh3rf1-201ENSMUST00000034060 A0A1Y7VJH8 109 aa3.5□□□□□ -1.85
Sh3rf1-201ENSMUST00000034060 A030003K21RikA0A1Y7VIM3 128 aa3.48□□□□□ -1.85
Sh3rf1-201ENSMUST00000034060 Krtap21-1Q925H4 128 aa3.45□□□□□ -1.86
Sh3rf1-201ENSMUST00000034060 Gm4553A0A1B0GSA9 284 aa3.44□□□□□ -1.86
Sh3rf1-201ENSMUST00000034060 Krtap28-10A0A1Y7VP58 119 aa3.44□□□□□ -1.86
Sh3rf1-201ENSMUST00000034060 Hmcn1D3YXG0 5634 aa3.34□□□□□ -1.87
Sh3rf1-201ENSMUST00000034060 Krtap28-13A0A087WQP5 138 aa3.32□□□□□ -1.88
Sh3rf1-201ENSMUST00000034060 Gm6217A0A1Y7VJK9 128 aa3.27□□□□□ -1.89
Sh3rf1-201ENSMUST00000034060 A030005K14RikA0A1Y7VNY1 122 aa3.22□□□□□ -1.89
Sh3rf1-201ENSMUST00000034060 Gm10153A0A1B0GRL1 320 aa3.19□□□□□ -1.9
Sh3rf1-201ENSMUST00000034060 A030005L19RikA0A1Y7VIU2 113 aa3.17□□□□□ -1.9
Sh3rf1-201ENSMUST00000034060 A0A1Y7VJ07 166 aa3.14□□□□□ -1.91
Sh3rf1-201ENSMUST00000034060 Gm2431E9Q8S1 172 aa3.13□□□□□ -1.91
Sh3rf1-201ENSMUST00000034060 AhnakE9Q616 5656 aaKnown RBP3.04□□□□□ -1.92
Sh3rf1-201ENSMUST00000034060 Gm7544A0A1Y7VJ58 118 aa3.03□□□□□ -1.92
Sh3rf1-201ENSMUST00000034060 Gm40460A0A1B0GR10 244 aa3□□□□□ -1.93
Sh3rf1-201ENSMUST00000034060 Gm7579A0A1B0GRJ4 243 aa3□□□□□ -1.93
Sh3rf1-201ENSMUST00000034060 Krtap5-5Q2TA51 241 aa3□□□□□ -1.93
Sh3rf1-201ENSMUST00000034060 Krtap5-4Q62220 223 aa3□□□□□ -1.93
Sh3rf1-201ENSMUST00000034060 Gm45337A0A1B0GS71 263 aa2.98□□□□□ -1.93
Sh3rf1-201ENSMUST00000034060 A030014E15RikA0A1Y7VJV2 120 aa2.91□□□□□ -1.94
Sh3rf1-201ENSMUST00000034060 Gm39115A0A1B0GSH7 232 aa2.66□□□□□ -1.98
Sh3rf1-201ENSMUST00000034060 A0A286YCP9 139 aa2.43□□□□□ -2.02
Sh3rf1-201ENSMUST00000034060 Gm29735A0A1B0GT06 219 aa2.33□□□□□ -2.04
Sh3rf1-201ENSMUST00000034060 Gm45618A0A1B0GSA0 219 aa2.14□□□□□ -2.07
Sh3rf1-201ENSMUST00000034060 Krtap5-1Q64507 230 aa1.62□□□□□ -2.15
Sh3rf1-201ENSMUST00000034060 Gm4559A4IF42 199 aa1.12□□□□□ -2.23
Retrieved 80 of 22,080 RNA–protein pairs in 6.2 ms