RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 ObscnA2AAJ9 8891 aaKnown RBP5.09□□□□□ -1.59
Trim28-201ENSMUST00000005705 Lce3dE9Q8V1 98 aa5.07□□□□□ -1.6
Trim28-201ENSMUST00000005705 Lce3eF8VQJ0 98 aa5.03□□□□□ -1.6
Trim28-201ENSMUST00000005705 Lce3fQ6PAI4 98 aa5.03□□□□□ -1.6
Trim28-201ENSMUST00000005705 Krtap19-4Q925H7 84 aa5.02□□□□□ -1.61
Trim28-201ENSMUST00000005705 Lce1gQ9D195 139 aa5.02□□□□□ -1.61
Trim28-201ENSMUST00000005705 Krtap4-2B1AQ85 167 aa5□□□□□ -1.61
Trim28-201ENSMUST00000005705 Gm11555B1AQ89 175 aa4.98□□□□□ -1.61
Trim28-201ENSMUST00000005705 Sprr2iO70560 76 aa4.97□□□□□ -1.61
Trim28-201ENSMUST00000005705 Krtap4-9B1AQA9 244 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Gm11596B1AQB0 205 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Gm11564A2A4L9 201 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Gm11563B1AQ90 168 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Gm11595B1AQA7 289 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Krtap4-8B1AQA8 209 aa4.94□□□□□ -1.62
Trim28-201ENSMUST00000005705 Sprr2kO70562 68 aa4.91□□□□□ -1.62
Trim28-201ENSMUST00000005705 Krtap4-16Q91W93 202 aa4.86□□□□□ -1.63
Trim28-201ENSMUST00000005705 Krtap4-13Q9D7P3 165 aa4.86□□□□□ -1.63
Trim28-201ENSMUST00000005705 Sprr2hO70559 108 aa4.84□□□□□ -1.63
Trim28-201ENSMUST00000005705 Lce3aQ497I5 98 aa4.84□□□□□ -1.63
Trim28-201ENSMUST00000005705 Lce1bQ9D149 137 aa4.81□□□□□ -1.64
Trim28-201ENSMUST00000005705 2300003K06RikA2A4M0 262 aa4.8□□□□□ -1.64
Trim28-201ENSMUST00000005705 Sprr2fO70557 76 aa4.77□□□□□ -1.65
Trim28-201ENSMUST00000005705 Krtap31-2Q8CAY5 177 aa4.77□□□□□ -1.65
Trim28-201ENSMUST00000005705 Lce1lQ9D1G7 135 aa4.74□□□□□ -1.65
Trim28-201ENSMUST00000005705 Lce1kJ3QP15 125 aa4.73□□□□□ -1.65
Trim28-201ENSMUST00000005705 Muc19Q6PZE0 7524 aa4.72□□□□□ -1.65
Trim28-201ENSMUST00000005705 Sprr2eO70556 76 aa4.66□□□□□ -1.66
Trim28-201ENSMUST00000005705 Krtap4-7Q9D732 168 aa4.6□□□□□ -1.67
Trim28-201ENSMUST00000005705 Kmt2dQ6PDK2 5588 aa4.51□□□□□ -1.69
Trim28-201ENSMUST00000005705 Mt1P02802 61 aaKnown RBP4.48□□□□□ -1.69
Trim28-201ENSMUST00000005705 Krtap20-2E9Q0A8 60 aa4.4□□□□□ -1.7
Trim28-201ENSMUST00000005705 DstQ91ZU6 7393 aaKnown RBP4.33□□□□□ -1.72
Trim28-201ENSMUST00000005705 Gm11568A2A4M2 211 aa4.32□□□□□ -1.72
Trim28-201ENSMUST00000005705 Krtap9-1Q64526 186 aa4.32□□□□□ -1.72
Trim28-201ENSMUST00000005705 Gm10024A0A0A0MQA4 119 aa4.23□□□□□ -1.73
Trim28-201ENSMUST00000005705 A0A1Y7VJH8 109 aa4.2□□□□□ -1.74
Trim28-201ENSMUST00000005705 Hmcn1D3YXG0 5634 aa4.19□□□□□ -1.74
Trim28-201ENSMUST00000005705 Gm11554B1AQB2 190 aa4.07□□□□□ -1.76
Trim28-201ENSMUST00000005705 Krtap5-2Q9D5Z7 189 aa4.07□□□□□ -1.76
Trim28-201ENSMUST00000005705 Krtap6-3A0A087WQL6 57 aa4.07□□□□□ -1.76
Trim28-201ENSMUST00000005705 NebE9Q1W3 7152 aa3.99□□□□□ -1.77
Trim28-201ENSMUST00000005705 Mt3P28184 68 aa3.96□□□□□ -1.78
Trim28-201ENSMUST00000005705 Gm10153A0A1B0GRL1 320 aa3.95□□□□□ -1.78
Trim28-201ENSMUST00000005705 A0A1Y7VLE6 161 aa3.86□□□□□ -1.79
Trim28-201ENSMUST00000005705 Gm11559Q9D3H7 191 aa3.76□□□□□ -1.81
Trim28-201ENSMUST00000005705 Gm4553A0A1B0GSA9 284 aa3.7□□□□□ -1.82
Trim28-201ENSMUST00000005705 Gm2431E9Q8S1 172 aa3.66□□□□□ -1.82
Trim28-201ENSMUST00000005705 Gm45337A0A1B0GS71 263 aa3.66□□□□□ -1.82
Trim28-201ENSMUST00000005705 Gm11639A0A1D5RLM8 5808 aa3.65□□□□□ -1.83
Trim28-201ENSMUST00000005705 Gm40460A0A1B0GR10 244 aa3.53□□□□□ -1.84
Trim28-201ENSMUST00000005705 Gm7579A0A1B0GRJ4 243 aa3.53□□□□□ -1.84
Trim28-201ENSMUST00000005705 Krtap5-5Q2TA51 241 aa3.53□□□□□ -1.84
Trim28-201ENSMUST00000005705 Krtap5-4Q62220 223 aa3.53□□□□□ -1.84
Trim28-201ENSMUST00000005705 1110025L11RikO09048 78 aa3.42□□□□□ -1.86
Trim28-201ENSMUST00000005705 Krtap6-5Q925H3 78 aa3.42□□□□□ -1.86
Trim28-201ENSMUST00000005705 Gm39115A0A1B0GSH7 232 aa3.23□□□□□ -1.89
Trim28-201ENSMUST00000005705 Eppk1Q8R0W0 6548 aa3.21□□□□□ -1.89
Trim28-201ENSMUST00000005705 AhnakE9Q616 5656 aaKnown RBP3.21□□□□□ -1.9
Trim28-201ENSMUST00000005705 A030005L19RikA0A1Y7VIU2 113 aa3.15□□□□□ -1.9
Trim28-201ENSMUST00000005705 Gm10229O08631 77 aa3.04□□□□□ -1.92
Trim28-201ENSMUST00000005705 A0A1Y7VJ07 166 aa3.01□□□□□ -1.93
Trim28-201ENSMUST00000005705 Gpr98Q8VHN7 6298 aaKnown RBP3.01□□□□□ -1.93
Trim28-201ENSMUST00000005705 Sprr2bO70554 98 aa2.99□□□□□ -1.93
Trim28-201ENSMUST00000005705 Phgr1Q8K0G7 91 aa2.93□□□□□ -1.94
Trim28-201ENSMUST00000005705 Gm11567Q9D141 195 aa2.91□□□□□ -1.94
Trim28-201ENSMUST00000005705 Krtap21-1Q925H4 128 aa2.8□□□□□ -1.96
Trim28-201ENSMUST00000005705 A0A286YCP9 139 aa2.7□□□□□ -1.98
Trim28-201ENSMUST00000005705 Gm45618A0A1B0GSA0 219 aa2.68□□□□□ -1.98
Trim28-201ENSMUST00000005705 Gm29735A0A1B0GT06 219 aa2.65□□□□□ -1.98
Trim28-201ENSMUST00000005705 Krtap6-2O08884 159 aa2.57□□□□□ -2
Trim28-201ENSMUST00000005705 A030003K21RikA0A1Y7VIM3 128 aa1.99□□□□□ -2.09
Trim28-201ENSMUST00000005705 Krtap28-10A0A1Y7VP58 119 aa1.72□□□□□ -2.13
Trim28-201ENSMUST00000005705 Krtap5-1Q64507 230 aa1.68□□□□□ -2.14
Trim28-201ENSMUST00000005705 Gm6217A0A1Y7VJK9 128 aa1.57□□□□□ -2.16
Trim28-201ENSMUST00000005705 Gm4559A4IF42 199 aa1.55□□□□□ -2.16
Trim28-201ENSMUST00000005705 Krtap28-13A0A087WQP5 138 aa1.53□□□□□ -2.16
Trim28-201ENSMUST00000005705 A030005K14RikA0A1Y7VNY1 122 aa1.2□□□□□ -2.22
Trim28-201ENSMUST00000005705 A030014E15RikA0A1Y7VJV2 120 aa1.1□□□□□ -2.23
Trim28-201ENSMUST00000005705 Gm7544A0A1Y7VJ58 118 aa0.79□□□□□ -2.28
Retrieved 80 of 22,080 RNA–protein pairs in 95.7 ms