RNA–Protein interactions for RNA: ENSMUST00000187758.6

Usp40-204, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp40, Length 3,977 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-204ENSMUST00000187758 Romo1P60603 79 aa3.95□□□□□ -1.78
Usp40-204ENSMUST00000187758 2310079G19RikQ9D6L6 185 aa3.93□□□□□ -1.78
Usp40-204ENSMUST00000187758 Sec61bQ9CQS8 96 aaKnown RBP3.93□□□□□ -1.78
Usp40-204ENSMUST00000187758 PcloQ9QYX7 5068 aa3.93□□□□□ -1.78
Usp40-204ENSMUST00000187758 2310057N15RikQ9D6T8 200 aa3.88□□□□□ -1.79
Usp40-204ENSMUST00000187758 Gm17416Q30KP4 66 aa3.87□□□□□ -1.79
Usp40-204ENSMUST00000187758 CriptO70333 101 aa3.86□□□□□ -1.79
Usp40-204ENSMUST00000187758 Gm9955Q8CEJ8 102 aa3.84□□□□□ -1.79
Usp40-204ENSMUST00000187758 Herc1E9PZP8 4859 aa3.83□□□□□ -1.8
Usp40-204ENSMUST00000187758 Gm18596A0A1W2P860 280 aa3.83□□□□□ -1.8
Usp40-204ENSMUST00000187758 Gm21887J3QQ04 176 aa3.83□□□□□ -1.8
Usp40-204ENSMUST00000187758 Gm17606F6ZL36 78 aa3.82□□□□□ -1.8
Usp40-204ENSMUST00000187758 Gm20537G3UYK7 97 aa3.8□□□□□ -1.8
Usp40-204ENSMUST00000187758 Cox6b2Q80ZN9 88 aa3.8□□□□□ -1.8
Usp40-204ENSMUST00000187758 Fam229aB2KGE5 128 aa3.77□□□□□ -1.81
Usp40-204ENSMUST00000187758 2210017I01RikA0A0A6YVV1 95 aa3.75□□□□□ -1.81
Usp40-204ENSMUST00000187758 Gm10382Q3V0T5 144 aa3.75□□□□□ -1.81
Usp40-204ENSMUST00000187758 Prm2P07978 107 aa3.74□□□□□ -1.81
Usp40-204ENSMUST00000187758 Ndufaf8A2AMZ4 74 aa3.73□□□□□ -1.81
Usp40-204ENSMUST00000187758 Crct1Q6PAI5 102 aa3.73□□□□□ -1.81
Usp40-204ENSMUST00000187758 Prm1P02319 51 aa3.71□□□□□ -1.81
Usp40-204ENSMUST00000187758 Krtap13-1Q8K198 168 aa3.71□□□□□ -1.82
Usp40-204ENSMUST00000187758 Ush2AQ2QI47 5193 aa3.7□□□□□ -1.82
Usp40-204ENSMUST00000187758 Gm9789Q8BIG3 52 aa3.7□□□□□ -1.82
Usp40-204ENSMUST00000187758 Gm7735D3YX18 52 aa3.69□□□□□ -1.82
Usp40-204ENSMUST00000187758 Krtap3-1A2A591 98 aa3.68□□□□□ -1.82
Usp40-204ENSMUST00000187758 Krtap16-3Q8C1I6 86 aa3.68□□□□□ -1.82
Usp40-204ENSMUST00000187758 Gm10318A0A1W2P728 225 aa3.67□□□□□ -1.82
Usp40-204ENSMUST00000187758 Hmcn2A2AJ76 5100 aa3.65□□□□□ -1.83
Usp40-204ENSMUST00000187758 Krtap19-1Q925H2 87 aa3.65□□□□□ -1.83
Usp40-204ENSMUST00000187758 Krtap19-3Q925H6 87 aa3.63□□□□□ -1.83
Usp40-204ENSMUST00000187758 Krtap1-5A2A590 122 aa3.63□□□□□ -1.83
Usp40-204ENSMUST00000187758 Krtap1-3A2A588 173 aa3.62□□□□□ -1.83
Usp40-204ENSMUST00000187758 BC029722A0A0N4SW31 51 aa3.61□□□□□ -1.83
Usp40-204ENSMUST00000187758 Ubr4A2AN08 5180 aa3.61□□□□□ -1.83
Usp40-204ENSMUST00000187758 4932415D10RikA0A1W2P6U8 4986 aa3.59□□□□□ -1.83
Usp40-204ENSMUST00000187758 Gm19402J3QJV4 266 aa3.58□□□□□ -1.84
Usp40-204ENSMUST00000187758 Gm19426M0QWC7 77 aa3.57□□□□□ -1.84
Usp40-204ENSMUST00000187758 LorP18165 486 aa3.56□□□□□ -1.84
Usp40-204ENSMUST00000187758 Gm9112A2AI92 75 aa3.55□□□□□ -1.84
Usp40-204ENSMUST00000187758 ZanO88799 5376 aa3.53□□□□□ -1.84
Usp40-204ENSMUST00000187758 Spink7Q6IE32 76 aa3.49□□□□□ -1.85
Usp40-204ENSMUST00000187758 Gm40193A0A1B0GT39 78 aa3.49□□□□□ -1.85
Usp40-204ENSMUST00000187758 Krtap1-4Q3V2D6 188 aa3.49□□□□□ -1.85
Usp40-204ENSMUST00000187758 Fat4Q2PZL6 4981 aa3.47□□□□□ -1.85
Usp40-204ENSMUST00000187758 Rnf213E9Q555 5152 aaKnown RBP3.44□□□□□ -1.86
Usp40-204ENSMUST00000187758 B930094E09RikQ8C4T2 136 aa3.42□□□□□ -1.86
Usp40-204ENSMUST00000187758 Gm17402F6Z0L5 76 aa3.4□□□□□ -1.87
Usp40-204ENSMUST00000187758 Krtap12-1Q9Z287 130 aa3.35□□□□□ -1.87
Usp40-204ENSMUST00000187758 Krtap7-1Q9D3I6 87 aa3.34□□□□□ -1.88
Usp40-204ENSMUST00000187758 Sprr2a3Q4KL71 83 aa3.33□□□□□ -1.88
Usp40-204ENSMUST00000187758 Sprr2a1Q9CQK8 83 aa3.33□□□□□ -1.88
Usp40-204ENSMUST00000187758 Lce1jD3YUU5 139 aa3.32□□□□□ -1.88
Usp40-204ENSMUST00000187758 Gm10061D3Z714 54 aa3.32□□□□□ -1.88
Usp40-204ENSMUST00000187758 Krtap19-9aF8WH65 55 aa3.32□□□□□ -1.88
Usp40-204ENSMUST00000187758 SspoQ8CG65 4998 aa3.31□□□□□ -1.88
Usp40-204ENSMUST00000187758 Camk2n1Q6QWF9 78 aa3.27□□□□□ -1.89
Usp40-204ENSMUST00000187758 Krtap19-2Q925I0 141 aa3.25□□□□□ -1.89
Usp40-204ENSMUST00000187758 Krtap9-5A2A5X3 358 aa3.25□□□□□ -1.89
Usp40-204ENSMUST00000187758 Krtap17-1A2A5X6 109 aa3.2□□□□□ -1.9
Usp40-204ENSMUST00000187758 Gm19668J3QMD1 248 aa3.2□□□□□ -1.9
Usp40-204ENSMUST00000187758 Gm11569B1AQB1 180 aa3.17□□□□□ -1.9
Usp40-204ENSMUST00000187758 Tnp1P10856 55 aa3.13□□□□□ -1.91
Usp40-204ENSMUST00000187758 Lce1iQ9D6P5 149 aa3.11□□□□□ -1.91
Usp40-204ENSMUST00000187758 Muc5bE9Q5I3 4800 aa3.1□□□□□ -1.91
Usp40-204ENSMUST00000187758 Gm6358A0A087WPH4 74 aa3.07□□□□□ -1.92
Usp40-204ENSMUST00000187758 Lce1a2Q9D1K4 149 aa3.07□□□□□ -1.92
Usp40-204ENSMUST00000187758 Mt2P02798 61 aa3.01□□□□□ -1.93
Usp40-204ENSMUST00000187758 Krtap8-1O08633 61 aa3□□□□□ -1.93
Usp40-204ENSMUST00000187758 Krtap19-9bQ99NG9 58 aa3□□□□□ -1.93
Usp40-204ENSMUST00000187758 Mdn1A2ANY6 5589 aaKnown RBP2.95□□□□□ -1.94
Usp40-204ENSMUST00000187758 Krtap4-2B1AQ85 167 aa2.94□□□□□ -1.94
Usp40-204ENSMUST00000187758 Lce1gQ9D195 139 aa2.94□□□□□ -1.94
Usp40-204ENSMUST00000187758 Krtap4-6Q3V4B7 195 aa2.9□□□□□ -1.95
Usp40-204ENSMUST00000187758 Gm11555B1AQ89 175 aa2.88□□□□□ -1.95
Usp40-204ENSMUST00000187758 Krtap22-2J3QNX6 67 aa2.86□□□□□ -1.95
Usp40-204ENSMUST00000187758 Gm11596B1AQB0 205 aa2.85□□□□□ -1.95
Usp40-204ENSMUST00000187758 Krtap4-1Q3UUY3 169 aa2.84□□□□□ -1.95
Usp40-204ENSMUST00000187758 Gm11562A0PK51 136 aa2.83□□□□□ -1.96
Usp40-204ENSMUST00000187758 Syne2Q6ZWQ0 6874 aaKnown RBP2.81□□□□□ -1.96
Usp40-204ENSMUST00000187758 Krtap9-3Q3V2C1 136 aa2.77□□□□□ -1.97
Usp40-204ENSMUST00000187758 Gm11564A2A4L9 201 aa2.76□□□□□ -1.97
Usp40-204ENSMUST00000187758 Gm11563B1AQ90 168 aa2.76□□□□□ -1.97
Usp40-204ENSMUST00000187758 Gm11595B1AQA7 289 aa2.76□□□□□ -1.97
Usp40-204ENSMUST00000187758 Krtap4-8B1AQA8 209 aa2.76□□□□□ -1.97
Usp40-204ENSMUST00000187758 Lce1hQ9D6R3 140 aa2.75□□□□□ -1.97
Usp40-204ENSMUST00000187758 2310046K23RikA0A0A6YVW6 87 aa2.75□□□□□ -1.97
Usp40-204ENSMUST00000187758 4933428G20RikQ9D3X4 101 aa2.73□□□□□ -1.97
Usp40-204ENSMUST00000187758 Mt4P47945 62 aa2.7□□□□□ -1.98
Usp40-204ENSMUST00000187758 Krtap4-9B1AQA9 244 aa2.69□□□□□ -1.98
Usp40-204ENSMUST00000187758 Gm38119A0A0A6YX29 146 aa2.64□□□□□ -1.99
Usp40-204ENSMUST00000187758 Gm10272F7CZ33 110 aa2.63□□□□□ -1.99
Usp40-204ENSMUST00000187758 Sprr2kO70562 68 aa2.62□□□□□ -1.99
Usp40-204ENSMUST00000187758 Lce1bQ9D149 137 aa2.62□□□□□ -1.99
Usp40-204ENSMUST00000187758 Fsip2A2ARZ3 6995 aa2.62□□□□□ -1.99
Usp40-204ENSMUST00000187758 Krtap4-13Q9D7P3 165 aa2.6□□□□□ -1.99
Usp40-204ENSMUST00000187758 2300003K06RikA2A4M0 262 aa2.56□□□□□ -2
Usp40-204ENSMUST00000187758 Lce3bQ9CQM7 98 aa2.52□□□□□ -2.01
Usp40-204ENSMUST00000187758 Krtap4-7Q9D732 168 aa2.5□□□□□ -2.01
Usp40-204ENSMUST00000187758 Krtap6-3A0A087WQL6 57 aa2.48□□□□□ -2.01
Retrieved 100 of 22,080 RNA–protein pairs in 85.4 ms