RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Rpl37Q9D823 97 aa4.63□□□□□ -1.67
Trim39-201ENSMUST00000042717 Rnase13Q5GAM7 153 aa4.62□□□□□ -1.67
Trim39-201ENSMUST00000042717 2310057N15RikQ9D6T8 200 aa4.6□□□□□ -1.67
Trim39-201ENSMUST00000042717 A930033H14RikG5E8X6 103 aa4.59□□□□□ -1.68
Trim39-201ENSMUST00000042717 Romo1P60603 79 aa4.58□□□□□ -1.68
Trim39-201ENSMUST00000042717 4930507D05RikQ8C9C9 103 aa4.58□□□□□ -1.68
Trim39-201ENSMUST00000042717 2310079G19RikQ9D6L6 185 aa4.55□□□□□ -1.68
Trim39-201ENSMUST00000042717 Gm18596A0A1W2P860 280 aa4.52□□□□□ -1.69
Trim39-201ENSMUST00000042717 Crct1Q6PAI5 102 aa4.47□□□□□ -1.69
Trim39-201ENSMUST00000042717 Ush2AQ2QI47 5193 aa4.46□□□□□ -1.7
Trim39-201ENSMUST00000042717 Gm10318A0A1W2P728 225 aa4.45□□□□□ -1.7
Trim39-201ENSMUST00000042717 Ubr4A2AN08 5180 aa4.44□□□□□ -1.7
Trim39-201ENSMUST00000042717 Gm17416Q30KP4 66 aa4.41□□□□□ -1.7
Trim39-201ENSMUST00000042717 Hmcn2A2AJ76 5100 aa4.38□□□□□ -1.71
Trim39-201ENSMUST00000042717 Cox6b2Q80ZN9 88 aa4.37□□□□□ -1.71
Trim39-201ENSMUST00000042717 Ndufaf8A2AMZ4 74 aa4.36□□□□□ -1.71
Trim39-201ENSMUST00000042717 Gm17606F6ZL36 78 aa4.35□□□□□ -1.71
Trim39-201ENSMUST00000042717 Krtap13-1Q8K198 168 aa4.32□□□□□ -1.72
Trim39-201ENSMUST00000042717 Gm9112A2AI92 75 aa4.32□□□□□ -1.72
Trim39-201ENSMUST00000042717 Fam229aB2KGE5 128 aa4.32□□□□□ -1.72
Trim39-201ENSMUST00000042717 Krtap16-3Q8C1I6 86 aa4.31□□□□□ -1.72
Trim39-201ENSMUST00000042717 2210017I01RikA0A0A6YVV1 95 aa4.3□□□□□ -1.72
Trim39-201ENSMUST00000042717 Gm10382Q3V0T5 144 aa4.3□□□□□ -1.72
Trim39-201ENSMUST00000042717 Gm9789Q8BIG3 52 aa4.3□□□□□ -1.72
Trim39-201ENSMUST00000042717 ZanO88799 5376 aa4.3□□□□□ -1.72
Trim39-201ENSMUST00000042717 4932415D10RikA0A1W2P6U8 4986 aa4.3□□□□□ -1.72
Trim39-201ENSMUST00000042717 Gm7735D3YX18 52 aa4.28□□□□□ -1.72
Trim39-201ENSMUST00000042717 Prm1P02319 51 aa4.28□□□□□ -1.72
Trim39-201ENSMUST00000042717 Krtap3-1A2A591 98 aa4.27□□□□□ -1.73
Trim39-201ENSMUST00000042717 Krtap19-1Q925H2 87 aa4.26□□□□□ -1.73
Trim39-201ENSMUST00000042717 Krtap19-3Q925H6 87 aa4.26□□□□□ -1.73
Trim39-201ENSMUST00000042717 Krtap1-3A2A588 173 aa4.25□□□□□ -1.73
Trim39-201ENSMUST00000042717 LorP18165 486 aa4.23□□□□□ -1.73
Trim39-201ENSMUST00000042717 Gm20537G3UYK7 97 aa4.2□□□□□ -1.74
Trim39-201ENSMUST00000042717 Krtap1-5A2A590 122 aa4.18□□□□□ -1.74
Trim39-201ENSMUST00000042717 Gm19402J3QJV4 266 aa4.17□□□□□ -1.74
Trim39-201ENSMUST00000042717 Gm3880A0A1B0GSB3 72 aa4.16□□□□□ -1.74
Trim39-201ENSMUST00000042717 Fat4Q2PZL6 4981 aa4.16□□□□□ -1.74
Trim39-201ENSMUST00000042717 BC029722A0A0N4SW31 51 aa4.15□□□□□ -1.75
Trim39-201ENSMUST00000042717 Gm19426M0QWC7 77 aa4.12□□□□□ -1.75
Trim39-201ENSMUST00000042717 Gm9955Q8CEJ8 102 aa4.12□□□□□ -1.75
Trim39-201ENSMUST00000042717 Rnf213E9Q555 5152 aaKnown RBP4.11□□□□□ -1.75
Trim39-201ENSMUST00000042717 Camk2n1Q6QWF9 78 aa4.08□□□□□ -1.76
Trim39-201ENSMUST00000042717 Spink7Q6IE32 76 aa4.07□□□□□ -1.76
Trim39-201ENSMUST00000042717 Krtap1-4Q3V2D6 188 aa4.01□□□□□ -1.77
Trim39-201ENSMUST00000042717 A0A1Y7VJH8 109 aa4.01□□□□□ -1.77
Trim39-201ENSMUST00000042717 CriptO70333 101 aa4□□□□□ -1.77
Trim39-201ENSMUST00000042717 Krtap4-1Q3UUY3 169 aa3.95□□□□□ -1.78
Trim39-201ENSMUST00000042717 Lce1jD3YUU5 139 aa3.93□□□□□ -1.78
Trim39-201ENSMUST00000042717 B930094E09RikQ8C4T2 136 aa3.91□□□□□ -1.78
Trim39-201ENSMUST00000042717 Krtap12-1Q9Z287 130 aa3.89□□□□□ -1.79
Trim39-201ENSMUST00000042717 Krtap17-1A2A5X6 109 aa3.89□□□□□ -1.79
Trim39-201ENSMUST00000042717 Gm10061D3Z714 54 aa3.88□□□□□ -1.79
Trim39-201ENSMUST00000042717 SspoQ8CG65 4998 aa3.88□□□□□ -1.79
Trim39-201ENSMUST00000042717 Krtap28-10A0A1Y7VP58 119 aa3.86□□□□□ -1.79
Trim39-201ENSMUST00000042717 Sprr2a3Q4KL71 83 aa3.84□□□□□ -1.8
Trim39-201ENSMUST00000042717 Sprr2a1Q9CQK8 83 aa3.84□□□□□ -1.8
Trim39-201ENSMUST00000042717 Krtap19-9aF8WH65 55 aa3.83□□□□□ -1.8
Trim39-201ENSMUST00000042717 Gm17402F6Z0L5 76 aa3.83□□□□□ -1.8
Trim39-201ENSMUST00000042717 Gm40193A0A1B0GT39 78 aa3.82□□□□□ -1.8
Trim39-201ENSMUST00000042717 Krtap9-5A2A5X3 358 aa3.82□□□□□ -1.8
Trim39-201ENSMUST00000042717 Krtap19-2Q925I0 141 aa3.8□□□□□ -1.8
Trim39-201ENSMUST00000042717 Krtap7-1Q9D3I6 87 aa3.79□□□□□ -1.8
Trim39-201ENSMUST00000042717 Gm11555B1AQ89 175 aa3.74□□□□□ -1.81
Trim39-201ENSMUST00000042717 A0A1Y7VLE6 161 aa3.73□□□□□ -1.81
Trim39-201ENSMUST00000042717 Gm11569B1AQB1 180 aa3.73□□□□□ -1.81
Trim39-201ENSMUST00000042717 Krtap31-1Q9D644 177 aa3.72□□□□□ -1.81
Trim39-201ENSMUST00000042717 Krtap28-13A0A087WQP5 138 aa3.69□□□□□ -1.82
Trim39-201ENSMUST00000042717 Gm19668J3QMD1 248 aa3.69□□□□□ -1.82
Trim39-201ENSMUST00000042717 Lce1iQ9D6P5 149 aa3.68□□□□□ -1.82
Trim39-201ENSMUST00000042717 Gm11563B1AQ90 168 aa3.67□□□□□ -1.82
Trim39-201ENSMUST00000042717 Krtap4-7Q9D732 168 aa3.67□□□□□ -1.82
Trim39-201ENSMUST00000042717 Krtap31-2Q8CAY5 177 aa3.64□□□□□ -1.83
Trim39-201ENSMUST00000042717 Lce1a2Q9D1K4 149 aa3.64□□□□□ -1.83
Trim39-201ENSMUST00000042717 Muc5bE9Q5I3 4800 aa3.63□□□□□ -1.83
Trim39-201ENSMUST00000042717 Mdn1A2ANY6 5589 aaKnown RBP3.62□□□□□ -1.83
Trim39-201ENSMUST00000042717 A030005L19RikA0A1Y7VIU2 113 aa3.61□□□□□ -1.83
Trim39-201ENSMUST00000042717 Gm6358A0A087WPH4 74 aa3.6□□□□□ -1.83
Trim39-201ENSMUST00000042717 A030005K14RikA0A1Y7VNY1 122 aa3.57□□□□□ -1.84
Trim39-201ENSMUST00000042717 Mt2P02798 61 aa3.52□□□□□ -1.85
Trim39-201ENSMUST00000042717 Gm7544A0A1Y7VJ58 118 aa3.52□□□□□ -1.85
Trim39-201ENSMUST00000042717 Krtap4-2B1AQ85 167 aa3.47□□□□□ -1.85
Trim39-201ENSMUST00000042717 Krtap4-6Q3V4B7 195 aa3.45□□□□□ -1.86
Trim39-201ENSMUST00000042717 Krtap19-9bQ99NG9 58 aa3.45□□□□□ -1.86
Trim39-201ENSMUST00000042717 Lce1gQ9D195 139 aa3.45□□□□□ -1.86
Trim39-201ENSMUST00000042717 Krtap8-1O08633 61 aa3.44□□□□□ -1.86
Trim39-201ENSMUST00000042717 Syne2Q6ZWQ0 6874 aaKnown RBP3.38□□□□□ -1.87
Trim39-201ENSMUST00000042717 Gm11596B1AQB0 205 aa3.35□□□□□ -1.87
Trim39-201ENSMUST00000042717 Krtap22-2J3QNX6 67 aa3.33□□□□□ -1.88
Trim39-201ENSMUST00000042717 Krtap9-3Q3V2C1 136 aa3.31□□□□□ -1.88
Trim39-201ENSMUST00000042717 Tnp1P10856 55 aa3.3□□□□□ -1.88
Trim39-201ENSMUST00000042717 Gm11564A2A4L9 201 aa3.26□□□□□ -1.89
Trim39-201ENSMUST00000042717 Gm11595B1AQA7 289 aa3.26□□□□□ -1.89
Trim39-201ENSMUST00000042717 Krtap4-8B1AQA8 209 aa3.26□□□□□ -1.89
Trim39-201ENSMUST00000042717 Lce1hQ9D6R3 140 aa3.26□□□□□ -1.89
Trim39-201ENSMUST00000042717 A0A1Y7VJ07 166 aa3.26□□□□□ -1.89
Trim39-201ENSMUST00000042717 Fsip2A2ARZ3 6995 aa3.25□□□□□ -1.89
Trim39-201ENSMUST00000042717 Gm11562A0PK51 136 aa3.23□□□□□ -1.89
Trim39-201ENSMUST00000042717 Mt4P47945 62 aa3.22□□□□□ -1.89
Trim39-201ENSMUST00000042717 Krtap4-9B1AQA9 244 aa3.2□□□□□ -1.9
Retrieved 100 of 22,080 RNA–protein pairs in 79.9 ms