RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	YRF1-5	P0CX21	1796 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	YRF1-8	P0CX22	1796 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	RAD3	P06839	778 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	PRP22	P24384	1145 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	KIN82	P25341	720 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	PTR2	P32901	601 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	YPT7	P32939	208 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	CNS1	P33313	385 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	UBP13	P38187	747 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	BIT2	P38346	545 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	PIH1	P38768	344 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	SFB3	P38810	929 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	YHR131C	P38835	850 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	RNR4	P49723	345 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	PEX8	P53248	589 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	DCP2	P53550	970 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	LSC1	P53598	329 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	IST1	P53843	298 aa	Predicted RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	RTC4	P53850	401 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	GIM3	P53900	129 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	RCR2	Q03446	210 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	FUS2	Q05670	677 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	ORM2	Q06144	216 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	CRN1	Q06440	651 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	MDM36	Q06820	579 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	PGC1	Q08959	321 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	ACF2	Q12168	779 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	ZRT2	Q12436	422 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	POM34	Q12445	299 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	TMA7	Q3E764	64 aa	Known RBP	4.22	□□□□□ -1.73
SRP40	YKR092C	YKL033W-A	Q86ZR7	236 aa		4.22	□□□□□ -1.73
SRP40	YKR092C	RAD50	P12753	1312 aa		4.21	□□□□□ -1.73
SRP40	YKR092C	RPS9B	P05755	195 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	VMA2	P16140	517 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	IME1	P21190	360 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	MSP1	P28737	362 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	BCS1	P32839	456 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	SER1	P33330	395 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	NUF2	P33895	451 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	YHL017W	P38745	532 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	POP2	P39008	433 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	YJL070C	P40361	888 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	YIL166C	P40445	542 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	VID28	P40547	921 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	YRB1	P41920	201 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	STB4	P50104	949 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	SLD3	P53135	668 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	YAP1802	P53309	568 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	PPN1	Q04119	674 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	RGC1	Q06108	1083 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	THI22	Q06490	572 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	OMS1	Q06668	471 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	STP4	Q07351	490 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	TSR1	Q07381	788 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	PSR2	Q07949	397 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	SMC6	Q12749	1114 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	KRE5	P22023	1365 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	NUP188	P52593	1655 aa	Known RBP	4.21	□□□□□ -1.74
SRP40	YKR092C	SNF2	P22082	1703 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	SWI1	P09547	1314 aa		4.21	□□□□□ -1.74
SRP40	YKR092C	EDE1	P34216	1381 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	JIP3	O13555	125 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	SIR3	P06701	978 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	REC107	P21651	314 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	GFD2	P25370	566 aa	Known RBP	4.2	□□□□□ -1.74
SRP40	YKR092C	HSP104	P31539	908 aa	Known RBP	4.2	□□□□□ -1.74
SRP40	YKR092C	DGR2	P32330	852 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PLC1	P32383	869 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	TFC4	P33339	1025 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PTH2	P34222	208 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	NUP120	P35729	1037 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PHO11	P35842	467 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	MIA40	P36046	403 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PHO12	P38693	467 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PCL5	P38794	229 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SRP40	YKR092C	FMP10	P40098	244 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	PIG2	P40187	538 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	YIL092W	P40497	633 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	BUD8	P41698	603 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	TEL2	P53038	688 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	SPO1	P53541	631 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	SSL2	Q00578	843 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	TIM44	Q01852	431 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	MUK1	Q02866	612 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	RRN5	Q02983	363 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	RRP17	Q04031	235 aa	Predicted RBP	4.2	□□□□□ -1.74
SRP40	YKR092C	ECM11	Q04110	302 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	VPS20	Q04272	221 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	YDL073W	Q07454	984 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	TRM3	Q07527	1436 aa		4.2	□□□□□ -1.74
SRP40	YKR092C	GAL1	P04385	528 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	PIF1	P07271	859 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	RPC40	P07703	335 aa	Known RBP	4.19	□□□□□ -1.74
SRP40	YKR092C	CDC26	P14724	124 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	PMA2	P19657	947 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	HCA4	P20448	770 aa	Known RBP	4.19	□□□□□ -1.74
SRP40	YKR092C	PRP28	P23394	588 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	CLB1	P24868	471 aa		4.19	□□□□□ -1.74
SRP40	YKR092C	FEN2	P25621	512 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 144.7 ms