RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZSCAN29Q8IWY8 852 aaPredicted RBP23.58■■□□□ 1.37
CLN3-250ENST00000636839 MICALL2Q8IY33 904 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 ZNF444Q8N0Y2 327 aaPredicted RBP23.58■■□□□ 1.37
CLN3-250ENST00000636839 NSUN7Q8NE18 718 aaKnown RBP23.58■■□□□ 1.37
CLN3-250ENST00000636839 SLC12A7Q9Y666 1083 aa23.58■■□□□ 1.37
CLN3-250ENST00000636839 ZBED3Q96IU2 234 aaPredicted RBP23.57■■□□□ 1.36
CLN3-250ENST00000636839 CHAMP1Q96JM3 812 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 FAM217BQ9NTX9 383 aaPredicted RBP23.57■■□□□ 1.36
CLN3-250ENST00000636839 ZBTB43O43298 467 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 RCSD1Q6JBY9 416 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 DNAJC18Q9H819 358 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 VEZTQ9HBM0 779 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 CNOT7Q9UIV1 285 aaKnown RBP23.57■■□□□ 1.36
CLN3-250ENST00000636839 SERPINB13Q9UIV8 391 aa23.57■■□□□ 1.36
CLN3-250ENST00000636839 SYT1P21579 422 aa23.56■■□□□ 1.36
CLN3-250ENST00000636839 ZNF280AP59817 542 aaPredicted RBP23.56■■□□□ 1.36
CLN3-250ENST00000636839 SPDYE2Q495Y8 402 aa23.56■■□□□ 1.36
CLN3-250ENST00000636839 CDAN1Q8IWY9 1227 aa23.56■■□□□ 1.36
CLN3-250ENST00000636839 ASTN2O75129 1339 aaPredicted RBP23.56■■□□□ 1.36
CLN3-250ENST00000636839 TSPY3P0CV98 308 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 TSPY8P0CW00 308 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 METAP2P50579 478 aaKnown RBP eCLIP23.55■■□□□ 1.36
CLN3-250ENST00000636839 IFIT1BQ5T764 474 aaKnown RBP23.55■■□□□ 1.36
CLN3-250ENST00000636839 MTMR14Q8NCE2 650 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 MTA3Q9BTC8 594 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 PTPDC1A2A3K4 754 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 SHMT1P34896 483 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 TBC1D10BQ4KMP7 808 aaPredicted RBP23.55■■□□□ 1.36
CLN3-250ENST00000636839 ZNF654Q8IZM8 581 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 SMARCC2Q8TAQ2 1214 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 NUP133Q8WUM0 1156 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 CHMP4CQ96CF2 233 aa23.55■■□□□ 1.36
CLN3-250ENST00000636839 RPS12P25398 132 aaKnown RBP23.54■■□□□ 1.36
CLN3-250ENST00000636839 SHROOM1Q2M3G4 852 aaPredicted RBP23.54■■□□□ 1.36
CLN3-250ENST00000636839 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-250ENST00000636839 RNF181Q9P0P0 153 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 SBF1O95248 1867 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 HLA-DOAP06340 250 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 AKR1B1P15121 316 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 NUCB2P80303 420 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 NBR1Q14596 966 aa23.54■■□□□ 1.36
CLN3-250ENST00000636839 CMTR1Q8N1G2 835 aaKnown RBP23.54■■□□□ 1.36
CLN3-250ENST00000636839 CNTNAP1P78357 1384 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 GOLGA8AA7E2F4 631 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 ENTPD3O75355 529 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 NPM3O75607 178 aaKnown RBP23.53■■□□□ 1.36
CLN3-250ENST00000636839 BRD1O95696 1058 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 FDPSP14324 419 aaKnown RBP23.53■■□□□ 1.36
CLN3-250ENST00000636839 FOSBP53539 338 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 NFKBIBQ15653 356 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 TMTC2Q8N394 836 aa23.53■■□□□ 1.36
CLN3-250ENST00000636839 CLEC10AQ8IUN9 316 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 DPF2Q92785 391 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 LLPHQ9BRT6 129 aaKnown RBP23.52■■□□□ 1.36
CLN3-250ENST00000636839 TMEM39BQ9GZU3 492 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 ZNF287Q9HBT7 754 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 TMOD2Q9NZR1 351 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 PI4KBQ9UBF8 816 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 UBE2Q2LH0YL09 131 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 LARP1BQ659C4 914 aaKnown RBP23.52■■□□□ 1.36
CLN3-250ENST00000636839 DHX36Q9H2U1 1008 aaKnown RBP23.52■■□□□ 1.36
CLN3-250ENST00000636839 SIPA1L1O43166 1804 aa23.52■■□□□ 1.36
CLN3-250ENST00000636839 STX6O43752 255 aa23.51■■□□□ 1.35
CLN3-250ENST00000636839 C9orf131Q5VYM1 1079 aa23.51■■□□□ 1.35
CLN3-250ENST00000636839 SYNE3Q6ZMZ3 975 aa23.51■■□□□ 1.35
CLN3-250ENST00000636839 CRACR2BQ8N4Y2 399 aaPredicted RBP23.51■■□□□ 1.35
CLN3-250ENST00000636839 NEDD1Q8NHV4 660 aa23.51■■□□□ 1.35
CLN3-250ENST00000636839 PHKBQ93100 1093 aa23.51■■□□□ 1.35
CLN3-250ENST00000636839 DDNO94850 711 aaPredicted RBP23.5■■□□□ 1.35
CLN3-250ENST00000636839 NTRK3Q16288 839 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 CCDC82Q8N4S0 544 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 FANCBQ8NB91 859 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 CSRNP1Q96S65 589 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 CPLX1O14810 134 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 TROAPQ12815 778 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 GPR162Q16538 588 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 FOXD4L6Q3SYB3 417 aaPredicted RBP23.5■■□□□ 1.35
CLN3-250ENST00000636839 FOXD4L3Q6VB84 417 aaPredicted RBP23.5■■□□□ 1.35
CLN3-250ENST00000636839 CEP95Q96GE4 821 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 EHD4Q9H223 541 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 STX8Q9UNK0 236 aa23.5■■□□□ 1.35
CLN3-250ENST00000636839 TCP11L1Q9NUJ3 509 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 MTMR6Q9Y217 621 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 ATRNL1Q5VV63 1379 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 MYO1BO43795 1136 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 EPS15P42566 896 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 RTN1Q16799 776 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 CATIPQ7Z7H3 387 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 GPC2Q8N158 579 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 FAM151AQ8WW52 585 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 SWAP70Q9UH65 585 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 TAOK2Q9UL54 1235 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 MTMR7Q9Y216 660 aa23.49■■□□□ 1.35
CLN3-250ENST00000636839 VPS37CA5D8V6 355 aaPredicted RBP23.48■■□□□ 1.35
CLN3-250ENST00000636839 RRP1BQ14684 758 aaKnown RBP23.48■■□□□ 1.35
CLN3-250ENST00000636839 RASGRP2Q7LDG7 609 aa23.48■■□□□ 1.35
CLN3-250ENST00000636839 DGKHQ86XP1 1220 aa23.48■■□□□ 1.35
CLN3-250ENST00000636839 TRPM4Q8TD43 1214 aa23.48■■□□□ 1.35
CLN3-250ENST00000636839 TMEM47Q9BQJ4 181 aa23.48■■□□□ 1.35
CLN3-250ENST00000636839 GJB4Q9NTQ9 266 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 1491.4 ms