RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CWC22Q9HCG8 908 aaKnown RBP12.53□□□□□ -0.4
TRIM28-210ENST00000597618 COPRSQ9NQ92 184 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 PI4KBQ9UBF8 816 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 PRKAG2Q9UGJ0 569 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 PA2G4Q9UQ80 394 aaKnown RBP12.53□□□□□ -0.4
TRIM28-210ENST00000597618 AKAP2Q9Y2D5 859 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 A0A1B0GUL7 405 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L10C9JJH3 530 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 MSCO60682 206 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 PEX10O60683 326 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 TIMM10P62072 90 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 CCL14Q16627 93 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 MFSD14CQ5VZR4 134 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 MAFAQ8NHW3 353 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-210ENST00000597618 XAGE2Q96GT9 111 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 SENP6Q9GZR1 1112 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-210ENST00000597618 PORCNQ9H237 461 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 DHX36Q9H2U1 1008 aaKnown RBP12.52□□□□□ -0.41
TRIM28-210ENST00000597618 GINM1Q9NU53 330 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 RBPJLQ9UBG7 517 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 ATAD5Q96QE3 1844 aa12.52□□□□□ -0.41
TRIM28-210ENST00000597618 GLRX3O76003 335 aaKnown RBP12.51□□□□□ -0.41
TRIM28-210ENST00000597618 CDX2Q99626 313 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-210ENST00000597618 NOL10Q9BSC4 688 aaKnown RBP12.51□□□□□ -0.41
TRIM28-210ENST00000597618 PAGR1Q9BTK6 254 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 PRDM6Q9NQX0 595 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 RAI14Q9P0K7 980 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 HMG20BQ9P0W2 317 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 ZNF521Q96K83 1311 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 MAST2Q6P0Q8 1798 aa12.51□□□□□ -0.41
TRIM28-210ENST00000597618 DNM1LO00429 736 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 CCNA1P78396 465 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 MAP2K5Q13163 448 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 Q3C1V9 767 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 SPATA5Q8NB90 893 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 LPAR1Q92633 364 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 TRIM34Q9BYJ4 488 aa12.5□□□□□ -0.41
TRIM28-210ENST00000597618 DDX20Q9UHI6 824 aaKnown RBP12.5□□□□□ -0.41
TRIM28-210ENST00000597618 PLCG2P16885 1265 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 ATN1P54259 1190 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-210ENST00000597618 RTP1P59025 263 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 GORABQ5T7V8 394 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 TBC1D9Q6ZT07 1266 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 CRACR2BQ8N4Y2 399 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-210ENST00000597618 SH3RF3Q8TEJ3 882 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-210ENST00000597618 EDC3Q96F86 508 aaKnown RBP12.49□□□□□ -0.41
TRIM28-210ENST00000597618 SMC4Q9NTJ3 1288 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 ZBTB21Q9ULJ3 1066 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 RABGAP1Q9Y3P9 1069 aa12.49□□□□□ -0.41
TRIM28-210ENST00000597618 SLC15A5A6NIM6 579 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 E9PSI1 815 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 ANP32CO43423 234 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 GDF11O95390 407 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 BAG3O95817 575 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 ARID4AP29374 1257 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-210ENST00000597618 CNGA1P29973 690 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 JAG1P78504 1218 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 TFCP2Q12800 502 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L2Q6R6M4 530 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 PI16Q6UXB8 463 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 METTL16Q86W50 562 aaKnown RBP12.48□□□□□ -0.41
TRIM28-210ENST00000597618 FOXP4Q8IVH2 680 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-210ENST00000597618 SYMPKQ92797 1274 aaKnown RBP12.48□□□□□ -0.41
TRIM28-210ENST00000597618 NEUROD6Q96NK8 337 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 SEMA6BQ9H3T3 888 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 DNAJC18Q9H819 358 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 LRP2BPQ9P2M1 347 aa12.48□□□□□ -0.41
TRIM28-210ENST00000597618 FLT1P17948 1338 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 HOXC6P09630 235 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 SMAD3P84022 425 aaKnown RBP12.47□□□□□ -0.41
TRIM28-210ENST00000597618 ATP2B2Q01814 1243 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 SHHQ15465 462 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 WDR78Q5VTH9 848 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 POTEEQ6S8J3 1075 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 ATF7IPQ6VMQ6 1270 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 FAM9BQ8IZU0 186 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 EMILIN3Q9NT22 766 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 AATFQ9NY61 560 aaKnown RBP eCLIP12.47□□□□□ -0.41
TRIM28-210ENST00000597618 FLRT1Q9NZU1 646 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 ATP11BQ9Y2G3 1177 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 IVNS1ABPQ9Y6Y0 642 aa12.47□□□□□ -0.41
TRIM28-210ENST00000597618 FRMPD3Q5JV73 1810 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L15C9J2P7 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L13C9JLJ4 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L11C9JVI0 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L18D6R9N7 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L22D6RA61 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L17D6RBQ6 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L19D6RCP7 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L20D6RJB6 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 SRGAP3O43295 1099 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 CNMDO75829 334 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 HLA-DOAP06340 250 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 UQCRFS1P1P0C7P4 283 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 FOSL2P15408 326 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 PTPREP23469 700 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 USP17L24Q0WX57 530 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 GRB14Q14449 540 aa12.46□□□□□ -0.41
TRIM28-210ENST00000597618 SHROOM1Q2M3G4 852 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms