RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ERVK-24P63145 666 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 MECOMQ03112 1051 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 ZGPATQ8N5A5 531 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 USP38Q8NB14 1042 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 BADQ92934 168 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 TMOD4Q9NZQ9 345 aa17.08■□□□□ 0.32
SHKBP1-208ENST00000595726 BDP1A6H8Y1 2624 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 TIMM10P62072 90 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 SLF2Q8IX21 1173 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 EDC3Q96F86 508 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 APBA2Q99767 749 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 WDR18Q9BV38 432 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 TBC1D2Q9BYX2 928 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 AS3MTQ9HBK9 375 aa17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 PRDM5Q9NQX1 630 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 DDX20Q9UHI6 824 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-208ENST00000595726 TNFRSF10AO00220 468 aa17.06■□□□□ 0.32
SHKBP1-208ENST00000595726 SMAD3P84022 425 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-208ENST00000595726 MAP2K5Q13163 448 aa17.06■□□□□ 0.32
SHKBP1-208ENST00000595726 GJC2Q5T442 439 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-208ENST00000595726 ZNF521Q96K83 1311 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 CYP2C19P33261 490 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 TJAP1Q5JTD0 557 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 MFSD14CQ5VZR4 134 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 SH3RF1Q7Z6J0 888 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 MRPL50Q8N5N7 158 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 TRPV1Q8NER1 839 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 LPAR1Q92633 364 aa17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 CWC22Q9HCG8 908 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 PA2G4Q9UQ80 394 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-208ENST00000595726 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 DNM1LO00429 736 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 NPM3O75607 178 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 CIAO1O76071 339 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 ANO1Q5XXA6 986 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 SPTY2D1Q68D10 685 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 SLC39A5Q6ZMH5 540 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 TBC1D9Q6ZT07 1266 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 ERICH6Q7L0X2 663 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 MAST2Q6P0Q8 1798 aa17.04■□□□□ 0.32
SHKBP1-208ENST00000595726 CHD9Q3L8U1 2897 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 TRIM43BA6NCK2 446 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 USP17L10C9JJH3 530 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 MYCNP04198 464 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 GRIN2CQ14957 1233 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 TRIM60Q495X7 471 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 WDR78Q5VTH9 848 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 TRIM43Q96BQ3 446 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 EMILIN3Q9NT22 766 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 LTBP2Q14767 1821 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 ATAD5Q96QE3 1844 aa17.03■□□□□ 0.32
SHKBP1-208ENST00000595726 C19orf81C9J6K1 198 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 CNMDO75829 334 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 GDF11O95390 407 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 EPHB4P54760 987 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 ATP2B2Q01814 1243 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 PI16Q6UXB8 463 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 TEX11Q8IYF3 940 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 NPLOC4Q8TAT6 608 aa17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 SH3RF3Q8TEJ3 882 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 HERC5Q9UII4 1024 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-208ENST00000595726 ASNSP08243 561 aa17.01■□□□□ 0.31
SHKBP1-208ENST00000595726 NSUN4Q96CB9 384 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-208ENST00000595726 DNAJC18Q9H819 358 aa17.01■□□□□ 0.31
SHKBP1-208ENST00000595726 PDLIM7Q9NR12 457 aa17.01■□□□□ 0.31
SHKBP1-208ENST00000595726 PI4KBQ9UBF8 816 aa17.01■□□□□ 0.31
SHKBP1-208ENST00000595726 FRMPD3Q5JV73 1810 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 XIRP2A4UGR9 3374 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 TMEM265A0A087WTH1 108 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 PTPREP23469 700 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 ITGB8P26012 769 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 IL15P40933 162 aaPredicted RBP17■□□□□ 0.31
SHKBP1-208ENST00000595726 ZYXQ15942 572 aaKnown RBP17■□□□□ 0.31
SHKBP1-208ENST00000595726 PPM1EQ8WY54 764 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 FERMT2Q96AC1 680 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 XAGE2Q96GT9 111 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 HMG20BQ9P0W2 317 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 FBXO3Q9UK99 471 aa17■□□□□ 0.31
SHKBP1-208ENST00000595726 PDS5AQ29RF7 1337 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 REV3LO60673 3130 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 ZBTB22O15209 634 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 MSCO60682 206 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 LDHCP07864 332 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 ADCYAP1R1P41586 468 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 RAI14Q9P0K7 980 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 RABGAP1Q9Y3P9 1069 aa16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-208ENST00000595726 A0A1B0GUL7 405 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 SLC15A5A6NIM6 579 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 GLRX3O76003 335 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 PLA2G5P39877 138 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 GSTO1P78417 241 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 ARRDC4Q8NCT1 418 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 RNPC3Q96LT9 517 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 BTBD7Q9P203 1132 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 ZBTB21Q9ULJ3 1066 aa16.98■□□□□ 0.31
SHKBP1-208ENST00000595726 PTPRCP08575 1304 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 KBTBD13C9JR72 458 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 MAP4K4O95819 1239 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 HOXC6P09630 235 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms