RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TAOK2Q9UL54 1235 aa29.21■■■□□ 2.27
LSM4-202ENST00000593564 DOCK3Q8IZD9 2030 aa29.21■■■□□ 2.27
LSM4-202ENST00000593564 MYO5AQ9Y4I1 1855 aaKnown RBP29.21■■■□□ 2.27
LSM4-202ENST00000593564 C19orf81C9J6K1 198 aa29.2■■■□□ 2.26
LSM4-202ENST00000593564 IDH1O75874 414 aaKnown RBP29.2■■■□□ 2.26
LSM4-202ENST00000593564 HLA-DOAP06340 250 aa29.2■■■□□ 2.26
LSM4-202ENST00000593564 HOXA7P31268 230 aaPredicted RBP29.2■■■□□ 2.26
LSM4-202ENST00000593564 CERS3Q8IU89 383 aa29.2■■■□□ 2.26
LSM4-202ENST00000593564 MORF4L1Q9UBU8 362 aa29.2■■■□□ 2.26
LSM4-202ENST00000593564 SAP30BPQ9UHR5 308 aaKnown RBP29.2■■■□□ 2.26
LSM4-202ENST00000593564 TRIOBPQ9H2D6 2365 aa29.19■■■□□ 2.26
LSM4-202ENST00000593564 GDF11O95390 407 aa29.19■■■□□ 2.26
LSM4-202ENST00000593564 IRX3P78415 501 aaPredicted RBP29.19■■■□□ 2.26
LSM4-202ENST00000593564 ERC1Q8IUD2 1116 aa29.19■■■□□ 2.26
LSM4-202ENST00000593564 ZBTB21Q9ULJ3 1066 aa29.19■■■□□ 2.26
LSM4-202ENST00000593564 SHROOM1Q2M3G4 852 aaPredicted RBP29.18■■■□□ 2.26
LSM4-202ENST00000593564 TMED8Q6PL24 325 aaPredicted RBP29.18■■■□□ 2.26
LSM4-202ENST00000593564 DEFB118Q96PH6 123 aa29.18■■■□□ 2.26
LSM4-202ENST00000593564 GJD2Q9UKL4 321 aa29.18■■■□□ 2.26
LSM4-202ENST00000593564 USP17L10C9JJH3 530 aa29.17■■■□□ 2.26
LSM4-202ENST00000593564 MAGEB6Q8N7X4 407 aa29.17■■■□□ 2.26
LSM4-202ENST00000593564 MIGA1Q8NAN2 632 aa29.17■■■□□ 2.26
LSM4-202ENST00000593564 EXOC6BQ9Y2D4 811 aa29.17■■■□□ 2.26
LSM4-202ENST00000593564 TFRCP02786 760 aaKnown RBP29.16■■■□□ 2.26
LSM4-202ENST00000593564 P2RX7Q99572 595 aaKnown RBP29.16■■■□□ 2.26
LSM4-202ENST00000593564 CRISPLD2Q9H0B8 497 aa29.16■■■□□ 2.26
LSM4-202ENST00000593564 ZBED9Q6R2W3 1325 aa29.16■■■□□ 2.26
LSM4-202ENST00000593564 HMGCRP04035 888 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 MAP3K12Q12852 859 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 CHRDL2Q6WN34 429 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 AACSQ86V21 672 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 PANK1Q8TE04 598 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 ANTXR1Q9H6X2 564 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 NDUFB9Q9Y6M9 179 aa29.15■■■□□ 2.26
LSM4-202ENST00000593564 RANBP2P49792 3224 aaKnown RBP29.14■■■□□ 2.26
LSM4-202ENST00000593564 USP5P45974 858 aa29.14■■■□□ 2.26
LSM4-202ENST00000593564 HERVK_113P62684 666 aa29.14■■■□□ 2.26
LSM4-202ENST00000593564 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.14■■■□□ 2.26
LSM4-202ENST00000593564 NR2E3Q9Y5X4 410 aa29.14■■■□□ 2.26
LSM4-202ENST00000593564 HSP90AB4PQ58FF6 505 aa29.13■■■□□ 2.25
LSM4-202ENST00000593564 GPRC5AQ8NFJ5 357 aa29.13■■■□□ 2.25
LSM4-202ENST00000593564 EHD4Q9H223 541 aa29.13■■■□□ 2.25
LSM4-202ENST00000593564 TATDN1Q6P1N9 297 aa29.12■■■□□ 2.25
LSM4-202ENST00000593564 TXNRD2Q9NNW7 524 aa29.12■■■□□ 2.25
LSM4-202ENST00000593564 SERPINB13Q9UIV8 391 aa29.12■■■□□ 2.25
LSM4-202ENST00000593564 GH2P01242 217 aa29.11■■■□□ 2.25
LSM4-202ENST00000593564 DIEXFQ68CQ4 756 aaKnown RBP29.11■■■□□ 2.25
LSM4-202ENST00000593564 USP17L2Q6R6M4 530 aa29.11■■■□□ 2.25
LSM4-202ENST00000593564 GTF3C2Q8WUA4 911 aaPredicted RBP29.11■■■□□ 2.25
LSM4-202ENST00000593564 EMILIN3Q9NT22 766 aa29.11■■■□□ 2.25
LSM4-202ENST00000593564 RHPN1Q8TCX5 695 aa29.1■■■□□ 2.25
LSM4-202ENST00000593564 RPTORQ8N122 1335 aa29.1■■■□□ 2.25
LSM4-202ENST00000593564 TTC6Q86TZ1 520 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 SOCS4Q8WXH5 440 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 C12orf42Q96LP6 360 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 RIOK1Q9BRS2 568 aaKnown RBP29.09■■■□□ 2.25
LSM4-202ENST00000593564 IL1RAPL2Q9NP60 686 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 RBM27Q9P2N5 1060 aaKnown RBP29.09■■■□□ 2.25
LSM4-202ENST00000593564 RBPJLQ9UBG7 517 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 MYH1P12882 1939 aa29.09■■■□□ 2.25
LSM4-202ENST00000593564 PEX10O60683 326 aa29.08■■■□□ 2.25
LSM4-202ENST00000593564 MS4A1P11836 297 aa29.08■■■□□ 2.25
LSM4-202ENST00000593564 TTF1Q15361 905 aaPredicted RBP29.08■■■□□ 2.25
LSM4-202ENST00000593564 ANKLE1Q8NAG6 615 aa29.08■■■□□ 2.25
LSM4-202ENST00000593564 NUDT12Q9BQG2 462 aa29.08■■■□□ 2.25
LSM4-202ENST00000593564 HMX1Q9NP08 348 aaPredicted RBP29.08■■■□□ 2.25
LSM4-202ENST00000593564 PLXNB2O15031 1838 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 XRCC5P13010 732 aaKnown RBP29.07■■■□□ 2.24
LSM4-202ENST00000593564 CYP2B6P20813 491 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 MAPK4P31152 587 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 ERVK-9P63128 1117 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 ERVK-24P63145 666 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 TRIM32Q13049 653 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 TRIB2Q92519 343 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 PAWRQ96IZ0 340 aaKnown RBP29.07■■■□□ 2.24
LSM4-202ENST00000593564 PRO3102Q9H379 93 aa29.07■■■□□ 2.24
LSM4-202ENST00000593564 EVI5O60447 810 aa29.06■■■□□ 2.24
LSM4-202ENST00000593564 CERKLQ49MI3 558 aaPredicted RBP29.06■■■□□ 2.24
LSM4-202ENST00000593564 NECAB2Q7Z6G3 386 aa29.06■■■□□ 2.24
LSM4-202ENST00000593564 USP14P54578 494 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 PDE3AQ14432 1141 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 Q3C1V9 767 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 MAP3K21Q5TCX8 1036 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 POTEEQ6S8J3 1075 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 RPAP2Q8IXW5 612 aaPredicted RBP29.05■■■□□ 2.24
LSM4-202ENST00000593564 CLASRPQ8N2M8 674 aaKnown RBP29.05■■■□□ 2.24
LSM4-202ENST00000593564 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.05■■■□□ 2.24
LSM4-202ENST00000593564 FEZ1Q99689 392 aa29.05■■■□□ 2.24
LSM4-202ENST00000593564 MAGEB6P1A0A0J9YX57 407 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 RAB3GAP1Q15042 981 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 ABCB5Q2M3G0 1257 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 DIS3LQ8TF46 1054 aaKnown RBP29.04■■■□□ 2.24
LSM4-202ENST00000593564 KIF1BPQ96EK5 621 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 PAGR1Q9BTK6 254 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 KIAA1683Q9H0B3 1180 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 PORCNQ9H237 461 aa29.04■■■□□ 2.24
LSM4-202ENST00000593564 USP17L15C9J2P7 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L13C9JLJ4 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L11C9JVI0 530 aa29.03■■■□□ 2.24
LSM4-202ENST00000593564 USP17L18D6R9N7 530 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms