RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C2CD5Q86YS7 1000 aa15.22■□□□□ 0.03
VPS4A-204ENST00000566354 PUS7LQ9H0K6 701 aaKnown RBP15.22■□□□□ 0.03
VPS4A-204ENST00000566354 IQSEC3Q9UPP2 1182 aaPredicted RBP15.22■□□□□ 0.03
VPS4A-204ENST00000566354 CCP110O43303 1012 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 CHRNA5P30532 468 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 GPSM2P81274 684 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 TRDNQ13061 729 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 TXNRD3Q86VQ6 643 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 KRT222Q8N1A0 295 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 JMYQ8N9B5 988 aa15.21■□□□□ 0.03
VPS4A-204ENST00000566354 PPP6R2O75170 966 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 CDKL5O76039 1030 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 UQCRFS1P1P0C7P4 283 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 SYKP43405 635 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 FANCCQ00597 558 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 ELF2Q15723 593 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 OLFM4Q6UX06 510 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 ZNF622Q969S3 477 aaKnown RBP eCLIP15.21■□□□□ 0.028e-6■■□□□ 12.8
VPS4A-204ENST00000566354 MASTLQ96GX5 879 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 FAM84BQ96KN1 310 aaPredicted RBP15.21■□□□□ 0.02
VPS4A-204ENST00000566354 GPR101Q96P66 508 aaPredicted RBP15.21■□□□□ 0.02
VPS4A-204ENST00000566354 GJB4Q9NTQ9 266 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 TUBE1Q9UJT0 475 aa15.21■□□□□ 0.02
VPS4A-204ENST00000566354 XDHP47989 1333 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 PPEF1O14829 653 aaPredicted RBP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 GPAA1O43292 621 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 WDHD1O75717 1129 aaPredicted RBP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 FBXO38Q6PIJ6 1188 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.2■□□□□ 0.021e-6■■■■□ 20.5
VPS4A-204ENST00000566354 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 ATF5Q9Y2D1 282 aaPredicted RBP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 V9GYY5 206 aaPredicted RBP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 ZMYM6O95789 1325 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 CCDC93Q567U6 631 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 SPATA5Q8NB90 893 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 FAM53CQ9NYF3 392 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 ANGEL1Q9UNK9 670 aaKnown RBP15.2■□□□□ 0.02
VPS4A-204ENST00000566354 HPSEQ9Y251 543 aa15.2■□□□□ 0.02
VPS4A-204ENST00000566354 FAM237AA0A1B0GTK4 181 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 H0YIN7 160 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 CBFA2T2O43439 604 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 MYO1BO43795 1136 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 LMOD1P29536 600 aaPredicted RBP15.19■□□□□ 0.02
VPS4A-204ENST00000566354 MARCKSP29966 332 aaPredicted RBP15.19■□□□□ 0.02
VPS4A-204ENST00000566354 SYT10Q6XYQ8 523 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 ALG1Q9BT22 464 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 MROH7-TTC4A0A0A0MT08 1334 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 IRS2Q9Y4H2 1338 aa15.19■□□□□ 0.02
VPS4A-204ENST00000566354 CAVIN4Q5BKX8 364 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 CPLX2Q6PUV4 134 aaKnown RBP15.18■□□□□ 0.02
VPS4A-204ENST00000566354 VPS37DQ86XT2 251 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 RAB11FIP4Q86YS3 637 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 PIH1D3Q9NQM4 214 aaKnown RBP15.18■□□□□ 0.02
VPS4A-204ENST00000566354 LRRC37AA6NMS7 1700 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 ALDH1B1P30837 517 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 METAP2P50579 478 aaKnown RBP eCLIP15.18■□□□□ 0.02
VPS4A-204ENST00000566354 MYL5Q02045 173 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 FBXO33Q7Z6M2 555 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 HSD3B7Q9H2F3 369 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 LEMD3Q9Y2U8 911 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 ATP6V0A2Q9Y487 856 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 C10orf71Q711Q0 1435 aa15.18■□□□□ 0.02
VPS4A-204ENST00000566354 UFL1O94874 794 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 UBASH3AP57075 661 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 ETF1P62495 437 aaKnown RBP15.17■□□□□ 0.02
VPS4A-204ENST00000566354 KRT40Q6A162 431 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 ZNF771Q7L3S4 317 aaPredicted RBP15.17■□□□□ 0.02
VPS4A-204ENST00000566354 SP8Q8IXZ3 490 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 COL1A1P02452 1464 aaPredicted RBP15.17■□□□□ 0.02
VPS4A-204ENST00000566354 SLX4Q8IY92 1834 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 SLFN14P0C7P3 912 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 ATP1A3P13637 1013 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 GNL2Q13823 731 aaKnown RBP15.17■□□□□ 0.02
VPS4A-204ENST00000566354 PTPAQ15257 358 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 SHC4Q6S5L8 630 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.17■□□□□ 0.02
VPS4A-204ENST00000566354 POLLQ9UGP5 575 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 MYH7P12883 1935 aa15.17■□□□□ 0.02
VPS4A-204ENST00000566354 LTBP1Q14766 1721 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 IGSF3O75054 1194 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 SERPINC1P01008 464 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 H2AFXP16104 143 aaPredicted RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 HIBADHP31937 336 aaKnown RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 TTF1Q15361 905 aaPredicted RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 RESP18Q5W5W9 173 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 ISM2Q6H9L7 571 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 HOMER1Q86YM7 354 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 MTFR1LQ9H019 292 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 NBPF3Q9H094 633 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 GGA1Q9UJY5 639 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.16■□□□□ 0.023e-8■□□□□ 9.7
VPS4A-204ENST00000566354 SRCAPQ6ZRS2 3230 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 PHLPP2Q6ZVD8 1323 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 SH2B2O14492 632 aaPredicted RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 IDH1O75874 414 aaKnown RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 ADD2P35612 726 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 ERCC6LQ2NKX8 1250 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 STYK1Q6J9G0 422 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 TMC4Q7Z404 712 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 TBC1D16Q8TBP0 767 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms