RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZNF654Q8IZM8 581 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 OTUD5Q96G74 571 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 AIFM3Q96NN9 605 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 DSCC1Q9BVC3 393 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 ARPP21Q9UBL0 812 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 UTYO14607 1347 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 USP54Q70EL1 1684 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 LARGE1O95461 756 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 ALAS1P13196 640 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CDK11BP21127 795 aaKnown RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CDK8P49336 464 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 IRX3P78415 501 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 EVX2Q03828 476 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 SPECC1Q5M775 1068 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CUL5Q93034 780 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 SYAP1Q96A49 352 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 PGBD1Q96JS3 809 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 GPBP1L1Q9HC44 474 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 ARHGEF10LQ9HCE6 1279 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 TMOD4Q9NZQ9 345 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 GSG1L2A8MUP6 293 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 BIN1O00499 593 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CALM1P0DP23 149 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CALM2P0DP24 149 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CALM3P0DP25 149 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 LMNB1P20700 586 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 DNM1Q05193 864 aaKnown RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 SPP2Q13103 211 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CDC42EP5Q6NZY7 148 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 SMARCC2Q8TAQ2 1214 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 RASGRP4Q8TDF6 673 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 TNPO1Q92973 898 aaKnown RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 CCDC34Q96HJ3 373 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 ATP8A2Q9NTI2 1148 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 NOL7Q9UMY1 257 aaKnown RBP6.29□□□□□ -1.4
VPS13C-209ENST00000560637 ZHX2Q9Y6X8 837 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 DDX11L8A8MPP1 907 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 DDX39AO00148 427 aaKnown RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 KINO60870 393 aaKnown RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 KIAA2012Q0VF49 1180 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 LETM2Q2VYF4 491 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 RSBN1LQ6PCB5 846 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 CKAP2LQ8IYA6 745 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 TDRD7Q8NHU6 1098 aaKnown RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 ZSCAN10Q96SZ4 725 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 ZNF341Q9BYN7 854 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 CNPY2Q9Y2B0 182 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 MROH7-TTC4A0A0A0MT08 1334 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 NEDD4P46934 1319 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 CHMP2AO43633 222 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 TRAK2O60296 914 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 MYCLP12524 364 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 ARID4AP29374 1257 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 MCM7P33993 719 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 ANAPC15P60006 121 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 TGFB2P61812 414 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 HMGN5P82970 282 aaKnown RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 STRIP1Q5VSL9 837 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 SLFN13Q68D06 897 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 EEPD1Q7L9B9 569 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 RRP36Q96EU6 259 aaKnown RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 ZNF396Q96N95 335 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 BMP2KQ9NSY1 1161 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-209ENST00000560637 KLRF2D3W0D1 207 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 AKR1B1P15121 316 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 SYT1P21579 422 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 CTR9Q6PD62 1173 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 TMTC2Q8N394 836 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 WASF1Q92558 559 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 VTI1AQ96AJ9 217 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 RRAGCQ9HB90 399 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 MYOZ2Q9NPC6 264 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 PI4KBQ9UBF8 816 aa6.28□□□□□ -1.4
VPS13C-209ENST00000560637 PARP4Q9UKK3 1724 aaKnown RBP6.27□□□□□ -1.4
VPS13C-209ENST00000560637 CALML3P27482 149 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 MKRN4PQ13434 485 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 ZNF174Q15697 407 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 KLHL10Q6JEL2 608 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 PIK3AP1Q6ZUJ8 805 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 ZKSCAN4Q969J2 545 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 DEFB129Q9H1M3 183 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 RBM27Q9P2N5 1060 aaKnown RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 BAZ2BQ9UIF8 2168 aaKnown RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 GRIN3BO60391 1043 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 IDEP14735 1019 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 FGFR2P21802 821 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 HSP90AA4PQ58FG1 418 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 DCAF15Q66K64 600 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 STOX1Q6ZVD7 989 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 CYB5R4Q7L1T6 521 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 ZFPM1Q8IX07 1006 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 SLC10A4Q96EP9 437 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 ELP3Q9H9T3 547 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 SENP2Q9HC62 589 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 EPB41L4AQ9HCS5 686 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-209ENST00000560637 HACL1Q9UJ83 578 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 ZNF609O15014 1411 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 SPDYE3A6NKU9 549 aa6.27□□□□□ -1.41
VPS13C-209ENST00000560637 UBE2Q2LH0YL09 131 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms