RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ALX1Q15699 326 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CERKLQ49MI3 558 aaPredicted RBP15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CWC27Q6UX04 472 aaKnown RBP15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CCDC129Q6ZRS4 1044 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 ZIC5Q96T25 663 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 AS3MTQ9HBK9 375 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 ZBTB21Q9ULJ3 1066 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 BAZ2AQ9UIF9 1905 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 USP17L5A8MUK1 530 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 FOXP2O15409 715 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 HSPA1AP0DMV8 641 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 HSPA1BP0DMV9 641 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 HSPD1P10809 573 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 RRP1BQ14684 758 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 OTUD7BQ6GQQ9 843 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 ZNF589Q86UQ0 364 aaPredicted RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 MS4A4AQ96JQ5 239 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 CCDC17Q96LX7 622 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 ZCCHC17Q9NP64 241 aaKnown RBP15.51■□□□□ 0.07
NEDD8-208ENST00000560427 CABP5Q9NP86 173 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 AFG3L2Q9Y4W6 797 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 ZHX2Q9Y6X8 837 aa15.51■□□□□ 0.07
NEDD8-208ENST00000560427 ATAD5Q96QE3 1844 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 CCL15-CCL14A0A0B4J2E2 113 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 CHMLP26374 656 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 CCL15Q16663 113 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 ABCB5Q2M3G0 1257 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 VPS53Q5VIR6 699 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 WDR18Q9BV38 432 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 DSCC1Q9BVC3 393 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 CFHR5Q9BXR6 569 aa15.5■□□□□ 0.07
NEDD8-208ENST00000560427 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.5■□□□□ 0.07
NEDD8-208ENST00000560427 CYP2D7A0A087X1C5 515 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 MINDY4BA8MYZ0 360 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 GDF11O95390 407 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 GH2P01242 217 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 CDK8P49336 464 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 PPARAQ07869 468 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 TMEM179Q6ZVK1 233 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 FASTKD5Q7L8L6 764 aaKnown RBP15.49■□□□□ 0.07
NEDD8-208ENST00000560427 IFNL1Q8IU54 200 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 ZNF280CQ8ND82 737 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 BRI3BPQ8WY22 251 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 DYNLL2Q96FJ2 89 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 ANAPC4Q9UJX5 808 aa15.49■□□□□ 0.07
NEDD8-208ENST00000560427 PHIPQ8WWQ0 1821 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 A0A0G2JLL6 359 aaPredicted RBP15.48■□□□□ 0.07
NEDD8-208ENST00000560427 NT5C2P49902 561 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 EVX2Q03828 476 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 PDE4BQ07343 736 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 PRRT2Q7Z6L0 340 aaPredicted RBP15.48■□□□□ 0.07
NEDD8-208ENST00000560427 SLC44A5Q8NCS7 719 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 RNF186Q9NXI6 227 aa15.48■□□□□ 0.07
NEDD8-208ENST00000560427 SGSM2O43147 1006 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 FGAP02671 866 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 PCP11498 1178 aaKnown RBP15.47■□□□□ 0.07
NEDD8-208ENST00000560427 CTCFP49711 727 aaPredicted RBP15.47■□□□□ 0.07
NEDD8-208ENST00000560427 NOM1Q5C9Z4 860 aaKnown RBP15.47■□□□□ 0.07
NEDD8-208ENST00000560427 SH3D19Q5HYK7 790 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 CASC1Q6TDU7 716 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 ANKRD23Q86SG2 305 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 SKAP1Q86WV1 359 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 PROCA1Q8NCQ7 364 aaPredicted RBP15.47■□□□□ 0.07
NEDD8-208ENST00000560427 MKNK2Q9HBH9 465 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 CTNNA3Q9UI47 895 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 SLC45A1Q9Y2W3 748 aa15.47■□□□□ 0.07
NEDD8-208ENST00000560427 TRIM75PA6NK02 468 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 C19orf81C9J6K1 198 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 IGF2BP3O00425 579 aaKnown RBP eCLIP15.46■□□□□ 0.07
NEDD8-208ENST00000560427 BACE1P56817 501 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 JAG1P78504 1218 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 SPP2Q13103 211 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 RAB3GAP1Q15042 981 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 PTPN18Q99952 460 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.46■□□□□ 0.07
NEDD8-208ENST00000560427 PLIN4Q96Q06 1357 aa15.46■□□□□ 0.07
NEDD8-208ENST00000560427 MYH8P13535 1937 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 LOC285556D6RIA3 1793 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 USP17L10C9JJH3 530 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 MPHOSPH10O00566 681 aaKnown RBP15.45■□□□□ 0.06
NEDD8-208ENST00000560427 FOXN1O15353 648 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 AKR1B1P15121 316 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 RASA1P20936 1047 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 USP14P54578 494 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 SH2D4AQ9H788 454 aa15.45■□□□□ 0.06
NEDD8-208ENST00000560427 SMIM22K7EJ46 135 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 CDC45O75419 566 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 TRPA1O75762 1119 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 FGRP09769 529 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 GUCY1A2P33402 732 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 PABPC4Q13310 644 aaKnown RBP eCLIP15.44■□□□□ 0.066e-9■■■□□ 17.5
NEDD8-208ENST00000560427 MTMR2Q13614 643 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 MOGSQ13724 837 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 SHROOM1Q2M3G4 852 aaPredicted RBP15.44■□□□□ 0.06
NEDD8-208ENST00000560427 PPP4R3BQ5MIZ7 849 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 CCDC84Q86UT8 332 aaPredicted RBP15.44■□□□□ 0.06
NEDD8-208ENST00000560427 ZNF444Q8N0Y2 327 aaPredicted RBP15.44■□□□□ 0.06
NEDD8-208ENST00000560427 KIAA1683Q9H0B3 1180 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 IL25Q9H293 177 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms