RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZNF384Q8TF68 577 aa20.8■□□□□ 0.92
VPS29-204ENST00000548259 MEIS3Q99687 375 aa20.8■□□□□ 0.92
VPS29-204ENST00000548259 APBA2Q99767 749 aa20.8■□□□□ 0.92
VPS29-204ENST00000548259 PHIPQ8WWQ0 1821 aa20.8■□□□□ 0.92
VPS29-204ENST00000548259 PFASO15067 1338 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 COL6A1P12109 1028 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 ARID4AP29374 1257 aaPredicted RBP20.79■□□□□ 0.92
VPS29-204ENST00000548259 ERVK-9P63128 1117 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 ERVK-24P63145 666 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 CCNA1P78396 465 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 CACNB2Q08289 660 aaPredicted RBP20.79■□□□□ 0.92
VPS29-204ENST00000548259 NAA16Q6N069 864 aaPredicted RBP20.79■□□□□ 0.92
VPS29-204ENST00000548259 PLEKHH3Q7Z736 793 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 SH3RF3Q8TEJ3 882 aaPredicted RBP20.79■□□□□ 0.92
VPS29-204ENST00000548259 LOC285556D6RIA3 1793 aa20.79■□□□□ 0.92
VPS29-204ENST00000548259 HLA-DOAP06340 250 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 G3BP1Q13283 466 aaKnown RBP eCLIP20.78■□□□□ 0.92
VPS29-204ENST00000548259 MTX1Q13505 466 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 RRP1BQ14684 758 aaKnown RBP20.78■□□□□ 0.92
VPS29-204ENST00000548259 MFSD14CQ5VZR4 134 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 GPR142Q7Z601 462 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 PAGR1Q9BTK6 254 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 PRKAG2Q9UGJ0 569 aa20.78■□□□□ 0.92
VPS29-204ENST00000548259 MSCO60682 206 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 IGSF3O75054 1194 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 FAM109BQ6ICB4 259 aaPredicted RBP20.77■□□□□ 0.92
VPS29-204ENST00000548259 USP17L2Q6R6M4 530 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 PI16Q6UXB8 463 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 TXNRD2Q9NNW7 524 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 AATFQ9NY61 560 aaKnown RBP eCLIP20.77■□□□□ 0.92
VPS29-204ENST00000548259 RBPJLQ9UBG7 517 aa20.77■□□□□ 0.92
VPS29-204ENST00000548259 DOCK3Q8IZD9 2030 aa20.77■□□□□ 0.91
VPS29-204ENST00000548259 MDM2Q00987 491 aaPredicted RBP20.76■□□□□ 0.91
VPS29-204ENST00000548259 MORN1Q5T089 497 aa20.76■□□□□ 0.91
VPS29-204ENST00000548259 TGFBRAP1Q8WUH2 860 aa20.76■□□□□ 0.91
VPS29-204ENST00000548259 USP6NLQ92738 828 aa20.76■□□□□ 0.91
VPS29-204ENST00000548259 ZBTB21Q9ULJ3 1066 aa20.76■□□□□ 0.91
VPS29-204ENST00000548259 DDX60LQ5H9U9 1706 aaKnown RBP20.75■□□□□ 0.91
VPS29-204ENST00000548259 CCND3P30281 292 aaPredicted RBP20.75■□□□□ 0.91
VPS29-204ENST00000548259 PPP4CP60510 307 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 MAP2K5Q13163 448 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 LRRC26Q2I0M4 334 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 CCDC158Q5M9N0 1113 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 LHX8Q68G74 356 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 MAPKAPK5Q8IW41 473 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 EDC3Q96F86 508 aaKnown RBP20.75■□□□□ 0.91
VPS29-204ENST00000548259 FEZ1Q99689 392 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 RABGAP1Q9Y3P9 1069 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 IVNS1ABPQ9Y6Y0 642 aa20.75■□□□□ 0.91
VPS29-204ENST00000548259 ALPK3Q96L96 1907 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 MCAMP43121 646 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 TTC39AQ5SRH9 613 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 WDR78Q5VTH9 848 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 METTL16Q86W50 562 aaKnown RBP20.74■□□□□ 0.91
VPS29-204ENST00000548259 CERS3Q8IU89 383 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.74■□□□□ 0.91
VPS29-204ENST00000548259 ARHGAP45Q92619 1136 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 PORCNQ9H237 461 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 FLT1P17948 1338 aa20.74■□□□□ 0.91
VPS29-204ENST00000548259 ZNF316A6NFI3 1004 aaPredicted RBP20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L15C9J2P7 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L13C9JLJ4 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L11C9JVI0 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L18D6R9N7 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L22D6RA61 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L17D6RBQ6 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L19D6RCP7 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L20D6RJB6 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 GDF11O95390 407 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 GNAI2P04899 355 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 USP17L24Q0WX57 530 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 CCL14Q16627 93 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 SENP6Q9GZR1 1112 aaPredicted RBP20.73■□□□□ 0.91
VPS29-204ENST00000548259 PALD1Q9ULE6 856 aa20.73■□□□□ 0.91
VPS29-204ENST00000548259 CNGA1P29973 690 aa20.72■□□□□ 0.91
VPS29-204ENST00000548259 USP14P54578 494 aa20.72■□□□□ 0.91
VPS29-204ENST00000548259 ATP2B2Q01814 1243 aa20.72■□□□□ 0.91
VPS29-204ENST00000548259 Q3C1V9 767 aa20.72■□□□□ 0.91
VPS29-204ENST00000548259 SLC15A5A6NIM6 579 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 POTEB2H3BUK9 544 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 IPO8O15397 1037 aaKnown RBP20.71■□□□□ 0.91
VPS29-204ENST00000548259 PEX10O60683 326 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 ZNF697Q5TEC3 545 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 CDCA7LQ96GN5 454 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 EMILIN3Q9NT22 766 aa20.71■□□□□ 0.91
VPS29-204ENST00000548259 LPAR1Q92633 364 aa20.7■□□□□ 0.9
VPS29-204ENST00000548259 C12orf42Q96LP6 360 aa20.7■□□□□ 0.9
VPS29-204ENST00000548259 COL25A1Q9BXS0 654 aaPredicted RBP20.7■□□□□ 0.9
VPS29-204ENST00000548259 DNAJC18Q9H819 358 aa20.7■□□□□ 0.9
VPS29-204ENST00000548259 DDX20Q9UHI6 824 aaKnown RBP20.7■□□□□ 0.9
VPS29-204ENST00000548259 DNM1LO00429 736 aa20.69■□□□□ 0.9
VPS29-204ENST00000548259 GH2P01242 217 aa20.69■□□□□ 0.9
VPS29-204ENST00000548259 JAG1P78504 1218 aa20.69■□□□□ 0.9
VPS29-204ENST00000548259 OS9Q13438 667 aaPredicted RBP20.69■□□□□ 0.9
VPS29-204ENST00000548259 TRMT2AQ8IZ69 625 aaKnown RBP20.69■□□□□ 0.9
VPS29-204ENST00000548259 GPR108Q9NPR9 543 aa20.69■□□□□ 0.9
VPS29-204ENST00000548259 SNRKQ9NRH2 765 aa20.69■□□□□ 0.9
VPS29-204ENST00000548259 SAP30BPQ9UHR5 308 aaKnown RBP20.69■□□□□ 0.9
VPS29-204ENST00000548259 PTPREP23469 700 aa20.68■□□□□ 0.9
VPS29-204ENST00000548259 ZYXQ15942 572 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms